Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01051 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATAGGTGGTCACAAGGAGAAATTCGTGAGGTTGGATGAGTTGGATTCAAATTTGTCAGCATCCTCTGAATCAAGCAAGATGAAGAAATGCCGATTCAACCTAGAAAGCCTCCCACTGCCATTCATTAGCCGATCGAATCCTCGAAACGCGTCGCAATCGTTCCGTAGGGGAGTACAAATGAGCTCTGACGGAATTATAACCCTAGGCCGCTCGCTCCACTCTAGCGTGTCCAAAGTCATTTTCCCTGAGGACCTGAAAGTGTCAGAGCAGAAAATCTTCGATCCGCAGGACAAATCGCTTCTCTTCTGGAACAAGCTATTCGTCCTGTGCTGTATCCTCGCCGTCTCCATCGATCCTCTGTTCTTCTACCTCCCTGTGTTCAACCACGCCTCTTACTGCCTCGGAATGGACACTCAGCTTGCCGTCACGACCACCACCGCCCGTACGGCCGTCGACCTGTTCTACTTGATTCGGATGGCGTTCCAGTTCCGGACGGCTTACATTGCGCCATCTTCAAGGGTGTTTGGCCGCGGCGAACTTGTGATCGATCCGGCAGAGATCGCCAAGCGGTATCTTCAGCGCTATTTCATTGCCGATTTCCTCGCTGTTCTTCCTTTTCCTCAGGTTGTGGTGTGGAGATTTCTTCACAGGTCAAAAGGTTCAGAGGTGTTGGCAACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTACATTCCCAGATTTGTTAGGTTTATACCTTTGAACATAGAACTTAAGAAGACCGCAGGTGTTTTTGCTGAAAGCGCCTGGGCTGGTGCTGCTTACTATCTCCTCTTGTACATGCTTGCCAGTCATATAGCGGGAGCGTTCTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGAGACAAGCGTGCAGAAGCAGTGGGAAGTGCAACATAAACTTTCTGTACTGCGGAAATAAGCACATGTCTGGGTATAAGGAGTGGAAAGTTATCAGTGTTGGTATTCTCAGAAGGAAATGCACAGCCATTGGAGATAATTTGCCATTCAACTATGGCATTTACACACAGGCTATTGCCTCTGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTACTGCTTGTGGTGGGGCTTGCAAAATTTGAGTACGCTTGGCCAGGGACTGCTCACCAGTACCTATCCAGGGGAGGTTATCTTTTCCATACTAATTGCAATTTCTGGGCTCATCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTATCTTCAATCTCTAACAGTTCGCCTTGAGGAGATGCGCATCAAAAGGCGAGACTCGGAGCAGTGGATGCACCATCGGTTGCTTCCACCGGACTTGAGAGAAAAAGTTAGGCGCTATGATCAATACAAATGGCTTGAAACTAGAGGAGTGGATGAAGAGAGCTTGGTTCAAAGTCTTCCAAAGGACCTTAGGAGAGACATTAAACGCCATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTTTGTTTGCGAACATGGACGAACGACTTCTAGACGCAATATGCGAGAGGCTAAAGCCAACACTATACACACAGAACACATACATAGTCCGAGAAGGCGACCCAGTTGACGAAATGCTATTCATAATCCGTGGCCGCCTCGAGAGCGTCACGACCGACGGCGGTCGGAGTGGCTTCTTCAACCGTGGCGTTTTGAAAGAAGGCGACTTCTGCGGTGAGGAGCTGCTGACATGGGCTCTGGACCCCAAGTCCGGCGCCAATCTCCCATCCTCCACTCGCACTGTTCATGCCCTCACGGAGGTTGAAGCCTTCGCCTTGGAGGCGGAAGAGCTCAAGTTCGTGGCCAGCCAGTTCCGACGTCTGCACAGTCGGCAGGTCCAACACACGTTCAGATTCTACTCGCAGCAGTGGCGCACATGGGCGTCTTGTTTTATACAAGCGGCGTGGCGTCGGTATTTGAAGAGGAAGATAGCGGAGCTGCGGCGGAAGGAGGAGGAAGAGGAGGATGCAGCGGCGGCTGCGGCGGCATATGCGTCGACGAGGCTTGGGGCGACGATTTTGGCGTCGAGATTTGCAGCGAATGCGCTTAGAGGGCATCGAATGAGGAATTTGAGTGGGAGGACCTTGATTAACTTGCAGAAGCCTGCAGAGCCTGATTTTTCTGTGTATAAAGGAGAGTAA 2208 50.18 MFDCGGYKSQYIGGHKEKFVRLDELDSNLSASSESSKMKKCRFNLESLPLPFISRSNPRNASQSFRRGVQMSSDGIITLGRSLHSSVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSIDPLFFYLPVFNHASYCLGMDTQLAVTTTTARTAVDLFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPAEIAKRYLQRYFIADFLAVLPFPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFVRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINFLYCGNKHMSGYKEWKVISVGILRRKCTAIGDNLPFNYGIYTQAIASGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLILFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTQNTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGANLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAAAAAYASTRLGATILASRFAANALRGHRMRNLSGRTLINLQKPAEPDFSVYKGE 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5778938 5783396 - CmaCh11G010510.1 Cma11g01051 303560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01051 735 Gene3D Jelly Rolls 509 629 IPR014710 -
Cma11g01051 735 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Cma11g01051 735 Gene3D Helix hairpin bin 438 502 - -
Cma11g01051 735 SMART cnmp_10 511 642 IPR000595 -
Cma11g01051 735 CDD CAP_ED 511 642 IPR000595 -
Cma11g01051 735 Gene3D - 115 436 - -
Cma11g01051 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 732 - -
Cma11g01051 735 SUPERFAMILY Voltage-gated potassium channels 106 433 - -
Cma11g01051 735 Pfam Cyclic nucleotide-binding domain 532 621 IPR000595 -
Cma11g01051 735 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Cma11g01051 735 Pfam Ion transport protein 113 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma11g01051 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 13 732 - -
Cma11g01051 735 ProSiteProfiles IQ motif profile. 647 676 IPR000048 GO:0005515
Cma11g01051 735 Coils Coil 659 682 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01051 Cma-Chr11:5778938 Cma12g00858 Cma-Chr12:6341807 0 dispersed
Cma11g01051 Cma-Chr11:5778938 Cma05g01038 Cma-Chr5:8307756 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01051 K05391 - csv:101221166 1295.8