Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01065 ATGGGTGATACTGGAGAGGCTAACACTGATAACATGCGAAATCTTCGATGTTCATTTGGAGCATCTTCTTGTTCAACTGGAAATCTTCCTTTCTCGATGGATCAACTCAAAATTTCCCAAATGAACTGTTCACAAAGCCGCCCGCCGCACTTCCAGTCGAATTTTCTTGGCGATGATAGTAGAAGAGTTGGCTTACCTCCTAGCCCCAGCTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCGCGCGTCCGATGAACCAGCAACGTTATAACCTATTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCCTTTTTCTCTTTCGATTCTTTGCCTCCTTTAAGCCCGTCTTCATTTCGTGAGTCCCCAACTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGATAGGGATAACAGTTCAAATTCTTTGTTGCCTCCCTCACCTTATATGATAGCAAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATCCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCCTCTCCCATTCAGTAGCTCTAGTGGATTGGAGCGATCAACGAGTAGTAAAGGGAATGCTGGCATGTTAAAGCCGGCCAGCCAGTTTCTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAAAGGGTGAGAAGAAATCCGATGGGAACAGTGTGGATGACTTATTTTCTGCTTACATGAATTTGGATAATTTTGATTTGTTCCACTCTTCTGGGACCAACGGTAAGAATGTTCATGAAAATCAGGAGGATTTGGATAGCAGGGGTAGTGGAACAAAGACAAATGGGGGTGACAGCAGCGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCATGCCTGGATTGAATTCGTCCGGTGAGAAGAAGGAAGGGATCAAACGGACTGCGGGGGGAGATATTGCTCGAACTACCAGACATTACCGTAGTGTCTCCATGGATAGTTTTATGGACAAGTTGCAGTTTGGTGACGAGTCCCCCAAAATGCCTCCTACACCACCTGCTGTTCGTCCCGGACAACTTTCTTCAAACAACCTAGCTGACGGTAATTCAACTCCGTTCAGCTTGGAGCTTGTTAATAGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCACTAGCCGACCCCAAGCGCGTAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAGCTCACACTTCTACAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTAAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTCGCTACGACAGAGCTAAACGCACAGCCGCATCCCTCTAATGGAGTAATGCACCAACCTTCCAACAGTCACCATAGCCACCAGCTTCAGCTTCAGCAGCAGCACCATCACCAACAACAGCAAGAGATGCAGAAGCAGAATGGGAGTACAGCCACTAAACCAGAGTCCAACCAATAA 1698 45.7 MGDTGEANTDNMRNLRCSFGASSCSTGNLPFSMDQLKISQMNCSQSRPPHFQSNFLGDDSRRVGLPPSPSSPQIPPISPYSQIPIARPMNQQRYNLLPTHSRSLSQPSFFSFDSLPPLSPSSFRESPTTSNSDQVSADTSMEDRDNSSNSLLPPSPYMIANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPPLPFSSSSGLERSTSSKGNAGMLKPASQFLKREPSLEKSVDNNLEGKGEKKSDGNSVDDLFSAYMNLDNFDLFHSSGTNGKNVHENQEDLDSRGSGTKTNGGDSSDNEAESSVNESMPGLNSSGEKKEGIKRTAGGDIARTTRHYRSVSMDSFMDKLQFGDESPKMPPTPPAVRPGQLSSNNLADGNSTPFSLELVNSEFSGAELKKIMANDKLAEIALADPKRVKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQPHPSNGVMHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5839114 5841780 - CmaCh11G010650.1 Cma11g01065 303574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01065 565 MobiDBLite consensus disorder prediction 119 250 - -
Cma11g01065 565 SUPERFAMILY Leucine zipper domain 417 468 IPR046347 GO:0003700|GO:0006355
Cma11g01065 565 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 554 - -
Cma11g01065 565 SMART brlzneu 413 477 IPR004827 GO:0003700|GO:0006355
Cma11g01065 565 CDD bZIP_plant_RF2 418 467 IPR044759 GO:0003700|GO:0006355
Cma11g01065 565 Coils Coil 496 516 - -
Cma11g01065 565 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 415 478 IPR004827 GO:0003700|GO:0006355
Cma11g01065 565 MobiDBLite consensus disorder prediction 119 157 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 319 333 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 181 216 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 68 82 - -
Cma11g01065 565 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 554 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 228 250 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 43 82 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 287 315 - -
Cma11g01065 565 Pfam bZIP transcription factor 417 471 IPR004827 GO:0003700|GO:0006355
Cma11g01065 565 MobiDBLite consensus disorder prediction 515 565 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 352 380 - -
Cma11g01065 565 Coils Coil 433 488 - -
Cma11g01065 565 MobiDBLite consensus disorder prediction 272 337 - -
Cma11g01065 565 Gene3D - 416 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01065 Cma-Chr11:5839114 Cma19g00704 Cma-Chr19:7204892 0 dispersed
Cma11g01065 Cma-Chr11:5839114 Cma11g01066 Cma-Chr11:5844972 0 tandem
Cma11g01065 Cma-Chr11:5839114 Cma19g00702 Cma-Chr19:7197762 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35864 PF00170 bZIP_1 2.80E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01065 - - cpep:111776417 835.869