Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01066 ATGAGTGATACTGCAGATGCTCATACTGATAACGCACGAAATATTCAATGTTCGTTTGGAACATCTTCCTCTGCTACTGTAAATCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTAAGTCGAATTTTCTTGGAGATAATAATAGAAGAATCGGGATACCGCCTTCTCCCAACTCATGGCAGATCCCTCCAATTTCACCGTACTCTCAGATCCCGATGTCGCGTCCGATGAACCAGCAAAGTTATCATCCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTGCTTTTTTCTCTCTTGATTCTTTGCCTCCTTTAAGCCCGTCCCCGTTTCGTGATTCTCCATCTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGACAGGGATGCCAGTTCACATTCTTTGTTGCCTCCTTCACCTTATATGAGGGCCAACTCTTCTAAGATGGGAGATGCTTTACCCCCTCGCAAGGCCCATAGGCGGTCTAATAGTGATATACCATTTGGATTCTCTTCTATGATCCAGTCATCTCCTCTTCTTCCTTCTAGTGGCTCAGGCGGATTGGAGCGATCAACAACTAGTAAAGAGAATGCCGGCGTGTTTAAGCCGGCGAACCAGTTTGTTAAAAGAGAACTTAGTTTGGAGAAAAGCACTGATAACAATTTGGAAGGAATGGGTGAAAGGAAGTCCGAAGGGGACACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAATTCCACAGGGACCAACGACAAGAATGGTCATGAGAATCGAGAGGATTTGGATAGTAGAGGTAGCGGAACGAAGACGGGGGGTGATAGCAGTGATAATGAAGCAGAAAGTAGTGTAAATGAAAGTGGGGATAACAATCAAATGCCTGGTTTGTATTCCTCTGCTGAGAAGAGGGAAGGGGTCAAACGGACTGCAGGGGTAGATATCGCTCCAACTACCCGACATTACCGGAGTGTCTCCATGGATAGTTTTATGGACAAGTTGCAGTTTGGTGACGAGTCACCCAAAATGCCTCCTACACCGCCTGGTGTTGGTCCAGGACAACTTTCTTCAAACAACCTAGCTGATGGTAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAGATTATGGCAAATGACAAACTTGCTGAGATTGCACTAGCTGACCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCGAAAGAAAGGAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCTCAACTCACGCTTCTACAGCGAGACTCTGTTGGACTTACAAACCAGAACAATGAGTTGAAGTTTCGTCTCCAGGCCATGGAACAGCAAGCACAACTAAGGGATGCTCTAAACGAAGCATTAACTGCGGAGGTTCAGCGATTGAAGCTCGCTACGACTGAGATAAACGCGCAATCTCATCCCTCAAACATGGTAATGGCTCAACCTTCAATGAATCACCATGGACTCCAGCTTCAGCAGCAGCAGCAACAGCATCATGTGCAGCAGAATGGCAATGGAACCACAAAACCAGAGTCCAACCAATAA 1692 45.27 MSDTADAHTDNARNIQCSFGTSSSATVNHHFSMDQLKISQMNCSQGRPQHFKSNFLGDNNRRIGIPPSPNSWQIPPISPYSQIPMSRPMNQQSYHPVPTHSRSLSQPAFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSSKMGDALPPRKAHRRSNSDIPFGFSSMIQSSPLLPSSGSGGLERSTTSKENAGVFKPANQFVKRELSLEKSTDNNLEGMGERKSEGDTVDDLFSAYMNLDNIDLFNSTGTNDKNGHENREDLDSRGSGTKTGGDSSDNEAESSVNESGDNNQMPGLYSSAEKREGVKRTAGVDIAPTTRHYRSVSMDSFMDKLQFGDESPKMPPTPPGVGPGQLSSNNLADGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTEINAQSHPSNMVMAQPSMNHHGLQLQQQQQQHHVQQNGNGTTKPESNQ 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5844972 5849322 - CmaCh11G010660.1 Cma11g01066 303575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01066 563 MobiDBLite consensus disorder prediction 527 563 - -
Cma11g01066 563 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 552 - -
Cma11g01066 563 SMART brlzneu 417 481 IPR004827 GO:0003700|GO:0006355
Cma11g01066 563 MobiDBLite consensus disorder prediction 290 319 - -
Cma11g01066 563 Coils Coil 500 520 - -
Cma11g01066 563 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700|GO:0006355
Cma11g01066 563 MobiDBLite consensus disorder prediction 115 249 - -
Cma11g01066 563 MobiDBLite consensus disorder prediction 275 289 - -
Cma11g01066 563 Gene3D - 420 472 - -
Cma11g01066 563 MobiDBLite consensus disorder prediction 181 216 - -
Cma11g01066 563 MobiDBLite consensus disorder prediction 356 388 - -
Cma11g01066 563 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700|GO:0006355
Cma11g01066 563 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700|GO:0006355
Cma11g01066 563 MobiDBLite consensus disorder prediction 56 102 - -
Cma11g01066 563 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700|GO:0006355
Cma11g01066 563 MobiDBLite consensus disorder prediction 268 336 - -
Cma11g01066 563 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 552 - -
Cma11g01066 563 MobiDBLite consensus disorder prediction 228 249 - -
Cma11g01066 563 MobiDBLite consensus disorder prediction 373 388 - -
Cma11g01066 563 Coils Coil 437 492 - -
Cma11g01066 563 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01066 Cma-Chr11:5844972 Cma19g00702 Cma-Chr19:7197762 0 dispersed
Cma11g01065 Cma-Chr11:5839114 Cma11g01066 Cma-Chr11:5844972 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35865 PF00170 bZIP_1 8.40E-09 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01066 - - csv:101215703 920.998