Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01083 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTATCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACATACGCAGAAGCACAATCGATTTTTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGATGCCATGGATGTTAAAACTCAAAGCTCCCACGCTTGCAGCAAGAGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCGCTGAAAAAGCTGCTCCGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCAATTGGGAATCAAAATCTGGAGAGGCAACAGGAATTCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGCTGGGTAAGTTCAGCACAGCTATGCTGA 750 48.67 MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKIDYPLCDICQERRALVFCQQDRAILCRECDISIHGTNEHTQKHNRFFLTGVKLSSTSFSYQTSSSSNGYNDAMDVKTQSSHACSKSPKMAAHETSSSPSAEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILAIGNQNLERQQEFTRHRKIWQHLGICSWVSSAQLC 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5944389 5946174 - CmaCh11G010830.1 Cma11g01083 303592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01083 249 ProSiteProfiles Zinc finger B-box type profile. 57 100 IPR000315 GO:0008270
Cma11g01083 249 MobiDBLite consensus disorder prediction 132 174 - -
Cma11g01083 249 CDD Bbox1_BBX-like 57 100 - -
Cma11g01083 249 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma11g01083 249 Gene3D Classic Zinc Finger 1 100 - -
Cma11g01083 249 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 224 - -
Cma11g01083 249 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma11g01083 249 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cma11g01083 249 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Cma11g01083 249 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cma11g01083 249 CDD Bbox1_BBX-like 5 47 - -
Cma11g01083 249 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01945 Cma-Chr1:12606514 Cma11g01083 Cma-Chr11:5944389 1.02E-51 dispersed
Cma11g01083 Cma-Chr11:5944389 Cma20g00817 Cma-Chr20:3862961 4.42E-65 dispersed
Cma11g01083 Cma-Chr11:5944389 Cma12g00429 Cma-Chr12:2230092 2.44E-53 wgd
Cma11g01083 Cma-Chr11:5944389 Cma19g00687 Cma-Chr19:7115841 8.30E-124 wgd
Cma11g01083 Cma-Chr11:5944389 Cma05g00283 Cma-Chr5:1210628 1.06E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35868 PF00643 zf-B_box 4.40E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01083 - - cmax:111469932 440.269