Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01083 | ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTATCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACATACGCAGAAGCACAATCGATTTTTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGATGCCATGGATGTTAAAACTCAAAGCTCCCACGCTTGCAGCAAGAGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCGCTGAAAAAGCTGCTCCGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCAATTGGGAATCAAAATCTGGAGAGGCAACAGGAATTCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGCTGGGTAAGTTCAGCACAGCTATGCTGA | 750 | 48.67 | MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKIDYPLCDICQERRALVFCQQDRAILCRECDISIHGTNEHTQKHNRFFLTGVKLSSTSFSYQTSSSSNGYNDAMDVKTQSSHACSKSPKMAAHETSSSPSAEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILAIGNQNLERQQEFTRHRKIWQHLGICSWVSSAQLC | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5944389 | 5946174 | - | CmaCh11G010830.1 | Cma11g01083 | 303592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01083 | 249 | ProSiteProfiles | Zinc finger B-box type profile. | 57 | 100 | IPR000315 | GO:0008270 | |
Cma11g01083 | 249 | MobiDBLite | consensus disorder prediction | 132 | 174 | - | - | |
Cma11g01083 | 249 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
Cma11g01083 | 249 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cma11g01083 | 249 | Gene3D | Classic Zinc Finger | 1 | 100 | - | - | |
Cma11g01083 | 249 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 224 | - | - | |
Cma11g01083 | 249 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cma11g01083 | 249 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
Cma11g01083 | 249 | Pfam | B-box zinc finger | 55 | 92 | IPR000315 | GO:0008270 | |
Cma11g01083 | 249 | Pfam | B-box zinc finger | 3 | 44 | IPR000315 | GO:0008270 | |
Cma11g01083 | 249 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cma11g01083 | 249 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 224 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01945 | Cma-Chr1:12606514 | Cma11g01083 | Cma-Chr11:5944389 | 1.02E-51 | dispersed | |
Cma11g01083 | Cma-Chr11:5944389 | Cma20g00817 | Cma-Chr20:3862961 | 4.42E-65 | dispersed | |
Cma11g01083 | Cma-Chr11:5944389 | Cma12g00429 | Cma-Chr12:2230092 | 2.44E-53 | wgd | |
Cma11g01083 | Cma-Chr11:5944389 | Cma19g00687 | Cma-Chr19:7115841 | 8.30E-124 | wgd | |
Cma11g01083 | Cma-Chr11:5944389 | Cma05g00283 | Cma-Chr5:1210628 | 1.06E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35868 | PF00643 | zf-B_box | 4.40E-07 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01083 | - | - | cmax:111469932 | 440.269 |