Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01087 ATGAAGCACCTCACAGTTTTGGCGGGAAGAAAGCTGTATGTTCCCGCCATGTCCCTTGGCTCACTGGCCATTTCTTCATCCCTCCGAATTTCACTGCTTCACTGTCCAGTAGCTATGGCGTCCGATTCTTCTCCAACTTCAATACAGGTCCGTCGAAGCCGTCGCCGCTCATCTACTCCTTCGGAATTTGCTACACCGCCGCGTCAACGATCTCGACTGGCCTCGTCGGAAACCTCCCCGACGGCTACGGAGCCGCGCTCGCGCCGGAAAGGTGGTGGACGAAGAGCGTCTGGTAGCCGAGCGACTCCGGTGGCTGCTACACCTACTTCAACGGATGATATTCCGCCGTCGACGGAGCCTGGCGATGGTGACGACATGGACGAGGACCATCCGACCTTTGTGTGGGGGACGAATATTAGTGTTGACGATGTTAAGGGAGCGATTATTCGGTTTTTGAGGCATTTCCGCGATTGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACCGAGGGAAAATACGCGGATGCAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATGCGGATTTATATACGAAGATGGTGAGGTATCCTCTCGAGGTTCTCGCAATTTTTGATATTGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATTTTCAATCTCAGAACTTCTACTTCAATGAGAAATCTTAACCCATCTGATATTGAGAGGATGGTGTCACTGAAGGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGAGAGGCGATATTTAGATGTCTTGTGTGTGGATACTACACTGACCCTGTAGCTATTGAGAGAGGAAGAGTGCCAAGCAAGGAACTCAATGACGCTGGTACACAACCGATGCAGGTGGAAGAGTTGAAGGAACTCTCTAAAAAACCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCTTTGAAATTGGCATCAGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTGTTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATCGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCGAAGGCTGGAATTATTGCTTCCCTCAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGTCTTTCTGTGATTGATAACATTCACCTTCCTCCTACTTTGTTATCTAGATTTGATTTGATCTATTTAATTCTGGATAAGGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCACTACACTTTGACAACCCAGAGGGCATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAATATTCACCCGAAATTGTCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAACTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTTATAACAGCTACTCCCCGGCAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCCGAATGGGTTGGAAAGGGTGATGTCCTTGAGGCTTTCCGCCTTCTTGAAGTCGCAATGCAACAGTCTGCAACAGATCATTCTACAGGAACTATTGACATGGATCTGATCACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAGGGAGACTATATTATCGGCAACTCACAACATTATTATGGAGAAAATGCAGCTCGGAGGACCCTCCATGCGCCTGACAGAGTTACTGGATGAGCTGAAGAAACAGAATCCTGATAATGAAGTCCACCTCAACAATCTTAGGAATGCGGTGTCGACGCTTGCAAATGAAGGATTTGTAGCAATCCATGGTGATAGCATAAAGAGAATATGA 2217 46.73 MKHLTVLAGRKLYVPAMSLGSLAISSSLRISLLHCPVAMASDSSPTSIQVRRSRRRSSTPSEFATPPRQRSRLASSETSPTATEPRSRRKGGGRRASGSRATPVAATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDCQASQSEGDFHTEGKYADAIKRVLEIEGDSLDVDAQDVFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRVPSKELNDAGTQPMQVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVGKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRETILSATHNIIMEKMQLGGPSMRLTELLDELKKQNPDNEVHLNNLRNAVSTLANEGFVAIHGDSIKRI 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5968219 5976657 + CmaCh11G010870.1 Cma11g01087 303596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01087 738 Gene3D - 647 730 IPR036388 -
Cma11g01087 738 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 CDD MCM4 331 640 - -
Cma11g01087 738 Pfam MCM N-terminal domain 147 245 IPR027925 -
Cma11g01087 738 Pfam MCM AAA-lid domain 554 640 IPR041562 -
Cma11g01087 738 Gene3D - 249 275 IPR012340 -
Cma11g01087 738 MobiDBLite consensus disorder prediction 40 132 - -
Cma11g01087 738 Gene3D - 276 300 - -
Cma11g01087 738 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma11g01087 738 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 312 737 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma11g01087 738 MobiDBLite consensus disorder prediction 40 82 - -
Cma11g01087 738 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 Gene3D - 138 244 - -
Cma11g01087 738 Gene3D - 316 646 IPR027417 -
Cma11g01087 738 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 102 301 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma11g01087 738 Pfam MCM OB domain 249 298 IPR033762 -
Cma11g01087 738 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 102 301 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 MobiDBLite consensus disorder prediction 102 116 - -
Cma11g01087 738 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 312 737 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 Coils Coil 698 718 - -
Cma11g01087 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 654 IPR027417 -
Cma11g01087 738 SMART mcm 245 642 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma11g01087 738 SUPERFAMILY Nucleic acid-binding proteins 166 296 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01087 Cma-Chr11:5968219 Cma17g01031 Cma-Chr17:7473100 3.96E-95 dispersed
Cma11g01087 Cma-Chr11:5968219 Cma19g00684 Cma-Chr19:7093951 2.04E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01087 K02212 - csv:101211850 798.119