Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01088 ATGTTTGGCAGTCTCCAAGTCAAAATGATGAAGAAGCCATGGGGCCCTGAAGATTACCATTGGAGTAGGGTCTTCGAACCAGCTATGGGCGATACTCGAGGTGGCTGCTGTCCATCCATGGATCTATTCCGCTCCGAGCCGATGCAGCTGGTGCAGCTCATCATTCCCATCGAGGCTGCGCATCGCACCATTTCCTACCTTGGTGATCTCGGTCTTCTCCAGTTCAAAGATCTCAATGTTGAGAAAAGCCCATTCCAGCGTACTTATGCTGCACAGATCAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAGATGTTGAAGGCTGGATTGTCAAGCAAAAGCTCTGTGTCACAAGTTGATATCAGTATAGATGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCAGAACTGGTTGAGATAAATGCTAATAGTGAGAAGCTACAGCGTTCCTACAATGAACTTGTGGAGTACAAGCTTGTTCTGCATAAGGCTGGTGAGTTTTTCAGTGCAGCGCAAAGCAGTGCCGTAGAGCAGCAAAGAGAATTTGAATCTAGGCGAGTTGGTGGAGATTCAATAGAAGTTCCATTGTTGTTGGAACAAGAATCATCTGCGGATCAGTCAAAGCCAGTTAATTTGGGATTTCTCTCTGGTCTTGTTCCTCGGGAAAAGTCTATGGCATTTGAGAGGATACTATTTCGTGCAACCAGGGGTAATGTGTTTCTGAAGCAGGCTGCAGTTGAGGATCCTGTTCCAGATCCTATTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTTTACTCTGGAGAAAGAGCGAAGAATAAGATTCTAAAAATATGTGAGGCATTTGGTGCAAATCGTTACCCTTTTACCGAGGACTTGGGGAAACAAGCCCAAATGATTTCTGAGGTTTCTGGAAAACTGGCTGAGCTGAAGACTACCATAGATTTAGGGCTGCTGCACCGGGGTAATCTGTTGAAGAATATTGGAGAACATTTTGAAAATTGGAATATCATGGCGAGGAAGGAAAAGTCCATATACCATATCTTGAACATGCTTAGCCTTGATGTAACCAAAAAATGTCTGGTCGCCGAGGGATGGGGTCCTGTTTTTGCAACAAAACAGATTCAAGATGCACTCCAGCGAGCAGCAACTGACTCCAATTCCCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGCACCACCTACTTATTTTCGGACAAACAAATTCTCCACTGCCTTTCAAGAAATTGTCGATGCTTATGGGGTAGCGAAGTATCAAGAAGCCAATCCTGGTGTATACACCATTGTCACATTTCCATTTCTGTTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGTCTGTTACTTGCAACACTCTATTTTATATTACGGGAAAAAAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGGGGACGCTATGTCATTTTGATGATGTCACTATTTTCGATATACACGGGTCTGATCTATAATGAGTTCTTCTCAGTCCCATTTGGACTATTTGGTCGCTCAGCATATGAATGCCGTAGTCCTGATTGCAGCGATTCCACCACTGTGGGGTTGATAAAGGCGGGTTCTACATATCCATTTGGCTTGGATCCTGTATGGCATGGCACTCGAAGTGAGCTTCCATTTCTCAACTCTCTGAAAATGAAAATGTCAATTCTCCTTGGAGTTGCACAAATGAATCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCCGGAACAGCATCAATATCTGGTTCCAATTCCTGCCACAGATGATATTTCTGAACAGCCTTTTCGGTTATCTTTCACTTCTGATCATCATAAAGTGGTGCACTGGTTCAAAAGCTGATCTGTACCACGTAATGATATATATGTTTTTGGGCCCAACTGAAGATCTGGCTGAAAATCAGCTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTCCTCTTACTCGCTCTTATTGCCGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTCCAAGGCCAGTCTTATGCGCCACTTCCAAGTGCTGATGATTCCCTTGAGTTGGACTCGCATCATGATTCACATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTTGTGCATCAGCTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCAAATACAGCCTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCACACTCGGAGTTGTCAAGTGTGTTCTATGACAAGGTTCTCGTTCTATCTGCAGGGTTCAACAACGTTATAATCTTAATAGTAGGCATTATCGTTTTTATTTTTGCTACCGTGGGTGTGTTGCTATTGATGGAGACTCTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTTCAAAATAAGTTCTACGAGGGAGACGGTTACAAATTCAATCCTTTCTCATTTGCATTGCTTGACGAAGATGATGAATAA 2541 42.94 MFGSLQVKMMKKPWGPEDYHWSRVFEPAMGDTRGGCCPSMDLFRSEPMQLVQLIIPIEAAHRTISYLGDLGLLQFKDLNVEKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLSSKSSVSQVDISIDDLEVKLGELEAELVEINANSEKLQRSYNELVEYKLVLHKAGEFFSAAQSSAVEQQREFESRRVGGDSIEVPLLLEQESSADQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQAAVEDPVPDPISGEKVEKNVFVVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMISEVSGKLAELKTTIDLGLLHRGNLLKNIGEHFENWNIMARKEKSIYHILNMLSLDVTKKCLVAEGWGPVFATKQIQDALQRAATDSNSQVGPIFQVLLTTEAPPTYFRTNKFSTAFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGRSAYECRSPDCSDSTTVGLIKAGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSKADLYHVMIYMFLGPTEDLAENQLFPGQKNVQIVLLLLALIAVPWMLLPKPFLLKKQHEQRFQGQSYAPLPSADDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNVIILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFNPFSFALLDEDDE 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5976677 5992228 + CmaCh11G010880.1 Cma11g01088 303597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01088 846 PIRSF ATP6V0A1 38 846 IPR026028 GO:0000220|GO:0046961
Cma11g01088 846 Coils Coil 121 155 - -
Cma11g01088 846 Pfam V-type ATPase 116kDa subunit family 66 838 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma11g01088 846 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 31 846 - -
Cma11g01088 846 PANTHER VACUOLAR PROTON ATPASES 31 846 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01088 Cma-Chr11:5976677 Cma20g00461 Cma-Chr20:2208366 0 dispersed
Cma11g01088 Cma-Chr11:5976677 Cma12g00431 Cma-Chr12:2249053 0 wgd
Cma11g01088 Cma-Chr11:5976677 Cma19g00683 Cma-Chr19:7079317 9.55E-105 wgd
Cma11g01088 Cma-Chr11:5976677 Cma05g00279 Cma-Chr5:1187764 9.24E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01088 K02154 - csv:101211364 1501.11