Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01093 ATGAACAGAGCATTGCCAGAAATGTCGAACACGGCTGAGAATTGTGTTGACACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTCAAATGGCAACAAGATCAGCTTTTGTATCAGCAGCAGCAGCTGCAGTCATTCAATGGGATGATGGATTACGGCGCTGGATTTCCACCGTCGGATCACCTCACCGGGTTTCCGGGCTTCATGAGTGCAGCCGGCGCCGGCGGCGATGGTGGGTTGTCACTTGTGGAGATGGTAATGGGAGCAGTGAAGCCTGACCCTGGTTTGGAAGATGGGTGGTCTGATCCTTCTCTGTTGTTGAATCCCCCCACTGCTTATGAACTAAATTCTTCTCTTTCTAGAACCTCCAGCTGCCCGCCGGCGGTGAATCCAGCGGCGGCGGCTGGAAGAGAAAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCAGAACCCCATTAACAACAAAGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAATTATCAAAAACGACAGATCAAAACAGCACCAAGAACAACAATTCAACCATTACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCCAAAGCCTCAGAGGTTAAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTGGAGTTCTTGTCCATGAAGTTAGCTGCAGTTAATCCAAGGCTGGACTTCAATGTGGATGATCTCTTCCTCAAAGAGGTATTTCCCCCTCCTTGCACCACCGCAAACTTCGCGGCGATCGGTGGAATTTCATCAGAGATCACAGATCCTTCATCCTACTTCCAATTTAATCGAAACAATCAACAAATCGTTCCGTGTTGTGGATTAGAAATGGGAATTAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAATTTCCTCGATTCATCCTGCCTCACCCAATTTCAAGGCTCTTCAGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCTTACACAGGTAAAGATGAGATTGAAACTGTGCAGTCAATTCTTCTTCCGCTTGTTCTTGCAATTATGACTGGAGAAAGAAAATTCAGAGAAATTAAGAAAGTGGATATTTAA 1347 44.99 MNRALPEMSNTAENCVDTLTVLERQRARFKWQQDQLLYQQQQLQSFNGMMDYGAGFPPSDHLTGFPGFMSAAGAGGDGGLSLVEMVMGAVKPDPGLEDGWSDPSLLLNPPTAYELNSSLSRTSSCPPAVNPAAAAGRESFKKRKAEKVQNPINNKEKRIKASSEEEKEEEEEEELSKTTDQNSTKNNNSTITTTTNNNRETSADTSKASEVKKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFLKEVFPPPCTTANFAAIGGISSEITDPSSYFQFNRNNQQIVPCCGLEMGINTSDVALRRTISAPVSFPENFLDSSCLTQFQGSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGKDEIETVQSILLPLVLAIMTGERKFREIKKVDI 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6019057 6021298 - CmaCh11G010930.1 Cma11g01093 303602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01093 448 SMART finulus 231 281 IPR011598 GO:0046983
Cma11g01093 448 CDD bHLH_AtBPE_like 215 300 - -
Cma11g01093 448 MobiDBLite consensus disorder prediction 116 213 - -
Cma11g01093 448 Pfam Helix-loop-helix DNA-binding domain 229 276 IPR011598 GO:0046983
Cma11g01093 448 Coils Coil 152 188 - -
Cma11g01093 448 Gene3D - 222 296 IPR036638 GO:0046983
Cma11g01093 448 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 17 406 - -
Cma11g01093 448 MobiDBLite consensus disorder prediction 137 165 - -
Cma11g01093 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 275 IPR011598 GO:0046983
Cma11g01093 448 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 406 IPR024097 GO:0006355
Cma11g01093 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 294 IPR036638 GO:0046983
Cma11g01093 448 MobiDBLite consensus disorder prediction 180 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01093 Cma-Chr11:6019057 Cma20g00847 Cma-Chr20:4056892 2.11E-57 dispersed
Cma14g00438 Cma-Chr14:2064459 Cma11g01093 Cma-Chr11:6019057 9.16E-45 dispersed
Cma11g01093 Cma-Chr11:6019057 Cma02g00394 Cma-Chr2:1995000 3.81E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35870 PF00010 HLH 1.30E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01093 - - cmo:103490373 593.193