Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01100 ATGGCGGTTTCCGGTAGAAATTCGACGGAGATTCACCCCGCTGACGAATCTTCCTCCAGTTCTTCTACAACTTCTCTATCTAACTTGAAAATCTACGCTGCGATCGGTATAATTGTTGCGTGTGTGATTGCGGCTTGTGCTTTGATCTTCCTCTGTTTCCGCAGAAATCGGAACTCGAGGAAGCACAAAATGCGGGTGAAGCACAGCTCCGGATTGATTCCTTTGGTCTCCAAGGAGATAGCTGAGATCAAAGAGTCCGATCGGACTGCGGATTGCGAGAAAGGGGAAGTGGTTAGGGTTGAGAAAAAGATGGAGATCGAGTTCGAAACTGGAGTAGGTAAAAAGAGTCAAGAGAGCGACGTATCCGGAGGCGGTCGGAGCGACGTGTCCGTGGAGGATCAGAACTTAGGGTGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATGGCCACCGATGGATTTCTGGAAGAGAATGTGATCGGAGAAGGAGGCTACGGTATTGTGTACAGAGGAGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAGTCTTCTTAACAATAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATTGGTTTCTGTGCAGAAGGAGCACAGAGGATGCTCGTGTTTGAATATATTGATAATGGCAACTTGGAGCAATGGCTACATGGTGATGTGGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGAACAGCAAAAGGCTTGGCCTATTTGCATGAAGGTTTGGAACCTAAAGTTGTGCACCGTGATGTAAAATCCAGCAACATTCTTTTAGATAGAAAATGGAATGCAAAAGTGTCCGACTTTGGACTTGCAAAGCTCTTACAACCCGAAGCCACCTACGTAACTACTCGAGTAATGGGGACATTCGGATATGTGTCCCCTGAGTATGCAAGTACAGGCATGCTAAACGAGGGAAGCGACGTATACAGTTTCGGGGTTCTACTTATGGAGATCATTACTGGTCGAAGCCCAATCGACTATTCCAGACCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCGAATCGACGTGGCGAAGAGGTTGTGGATCCATTGATTGAGATTCCACCCTCTCCAAGAGCTCTAAAGCGACTGTTGCTTGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATCGTTCACATGCTAGAGACAGATGACTTTCCTTATCGTTCGGAGCTTCGATCGGTGCGAGAGAAAGACAGCCAGCCTTCACGACTAGACATACCGAGTAAACTTCCATCAAAGCATGCTGGTATAGATGACACGGAATCAAGAAAGAGATAA 1413 47.77 MAVSGRNSTEIHPADESSSSSSTTSLSNLKIYAAIGIIVACVIAACALIFLCFRRNRNSRKHKMRVKHSSGLIPLVSKEIAEIKESDRTADCEKGEVVRVEKKMEIEFETGVGKKSQESDVSGGGRSDVSVEDQNLGWGRWYSLKELEMATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKSLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGFCAEGAQRMLVFEYIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRALKRLLLVCLRCIDLDANKRPKMGQIVHMLETDDFPYRSELRSVREKDSQPSRLDIPSKLPSKHAGIDDTESRKR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6090163 6093932 + CmaCh11G011000.1 Cma11g01100 303609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01100 470 CDD STKc_IRAK 160 426 - -
Cma11g01100 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Cma11g01100 470 SUPERFAMILY Protein kinase-like (PK-like) 132 427 IPR011009 -
Cma11g01100 470 MobiDBLite consensus disorder prediction 437 470 - -
Cma11g01100 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Cma11g01100 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01100 470 MobiDBLite consensus disorder prediction 1 23 - -
Cma11g01100 470 Pfam Protein kinase domain 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01100 470 Gene3D Phosphorylase Kinase; domain 1 126 229 - -
Cma11g01100 470 PANTHER OS03G0227900 PROTEIN 16 442 - -
Cma11g01100 470 PANTHER OS01G0323000 PROTEIN 16 442 - -
Cma11g01100 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Cma11g01100 470 SMART serkin_6 154 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01100 Cma-Chr11:6090163 Cma14g02059 Cma-Chr14:14306599 3.03E-172 dispersed
Cma11g01100 Cma-Chr11:6090163 Cma19g00663 Cma-Chr19:6968966 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68907 PF00069 Pkinase 5.40E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01100 - - cmax:111469650 903.279