Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01116 ATGGCCTTCTTCCACCCTACCGCTCTTCTTCTTCTACTTTGCCTATCTCTTCCATTCTCAGTTCACTCTCAGCTTTCTCTCGATTATTACCACAAAACTTGCCCCGACTTCGCAAAAATCGTTCACGACACTGTCGCCCGCAAGCACGCTACTAGCCCCGTCACCGCCGCTGCATCTATGCGCCTCTTCTTCAGCGATTGTTTGGTTGGAGGCTGCGATGCCTCTGTTCTTATTTCATCCAATGTCTTCAACCACGCCGAGCGCGATGCTGAAATCAACCACGCTCTTCCTGGTGATGCCTTCGACGTTGTCACTCGTGCGAAGATCACCTTAGAGCTCTCTTGCCCTGGGATAGTCTCTTGCTCTGATGTGTTAGCGCAGGCGACTAGAGATCTCATCGCGGCCTCAGGTGGACCGTCGTACAAAGTTGAATTAGGGAGAAAAGATAGCCTCGTCTCGAAGATTTCAGATGTGGAAGGTAACATTCCGAAACCGAATCAATCAATTGACGAATTGATTAAGCTATTCGAAGCGAAAGGATTCACGATTCAAGAAATGGTAGCGCTATACGGCGGACGCACAATCGGATTCTCGAATTGCAGGGAATTCAGCGATCGGCTCTTCAATTTCAGCAAAAACACGCCAACAGATCCTGAGATTAATTCGAAATACGCGGAGGCGTTGATGAAGTCCTGCGCCGACTACGAGAAGAATCCAGCAAGTTCGGCGTACAGCGACCCCGTAACGCCAGGGAAGTTCGACAACGTATACTACCAGAATCTGCTGAGAGGAATGGGAGTGTCGGCGTCGGATCACGCGCTGGCGAAGGATCCGAGGACAAGGAAATTCGTGGAGATGTACGCAGGGAACCAGGCATTATTCTTCAAGGATTTTGGACACGCCATGGAGAAGATGAGCGTTCGCGAGGTGAAAACCGACGGAAAGGGAGAAGTGAGGAGAAGATGCGATGCATTCAATACAATCAACCATTAG 993 50.05 MAFFHPTALLLLLCLSLPFSVHSQLSLDYYHKTCPDFAKIVHDTVARKHATSPVTAAASMRLFFSDCLVGGCDASVLISSNVFNHAERDAEINHALPGDAFDVVTRAKITLELSCPGIVSCSDVLAQATRDLIAASGGPSYKVELGRKDSLVSKISDVEGNIPKPNQSIDELIKLFEAKGFTIQEMVALYGGRTIGFSNCREFSDRLFNFSKNTPTDPEINSKYAEALMKSCADYEKNPASSAYSDPVTPGKFDNVYYQNLLRGMGVSASDHALAKDPRTRKFVEMYAGNQALFFKDFGHAMEKMSVREVKTDGKGEVRRRCDAFNTINH 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6277923 6278915 + CmaCh11G011160.1 Cma11g01116 303625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01116 330 SUPERFAMILY Heme-dependent peroxidases 24 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 Gene3D - 28 326 - -
Cma11g01116 330 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 Pfam Peroxidase 48 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PANTHER - 8 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 Gene3D Peroxidase, domain 2 163 305 - -
Cma11g01116 330 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01116 330 PANTHER PEROXIDASE 41 8 329 - -
Cma11g01116 330 CDD secretory_peroxidase 24 325 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00148 Cma-Chr10:676861 Cma11g01116 Cma-Chr11:6277923 0 dispersed
Cma11g00186 Cma-Chr11:953744 Cma11g01116 Cma-Chr11:6277923 0 dispersed
Cma11g00189 Cma-Chr11:967469 Cma11g01116 Cma-Chr11:6277923 0 dispersed
Cma11g01116 Cma-Chr11:6277923 Cma11g01161 Cma-Chr11:6725930 0 dispersed
Cma11g01116 Cma-Chr11:6277923 Cma11g01117 Cma-Chr11:6279275 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01116 K00430 - csv:101213178 517.309