Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01120 ATGGCTCTTGAGGCTGTTGTTTTCCATCAGCACCCATTTGGCAACAACGACAACAACAATGATCTCTTCAATTTGGTCTCTTCTTCGGCTCCCTTCACCTTCCCCCATGATGAACAACACCAAGATCTTTACTTTCTCACCAACCAAACACTCAATGGTGGTGGCGGAGGGAGTGGGCGGCCGGCGAGGCGGCGGCGGGGGGGAGGGAGAACCCAAAAGAATAAAGAGGAAATAGAGAATCAAAGAATCACTCATATTACTGTGGAGAGGAACCGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTGATGCCTCACTCCTACGTCCAAAGGGGCGACCAAGCCTCAATCATAGGCGGAGCCATCGACTTTGTGAAGCAGCTTGAGCAGCAAGTACATTTGCTTAGCAGCGCTCAAACATATGTAAACCCCTGTTTTCCCCCTCAAAATGCACCAATCTCTCATTTCTTTACCTGCCCTCACCTCTCCTCTGCTGCTTCCTCCTCCTCCTCCTCCTCCTCCCCCATGTCTTCCAACCAGATTCACTCCCCCATTGCCCACGTTCATGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATTAGCTGTACAAAGTTCCCTAAACAGCTTCTTAAGATCGTCTCTGCTTTGCATTCCTTGCGCCTCTCTGTTCTTCATCTCAATCTCTCCACTGCCCACCAAACTGTGCTCTATTCATTCAGTCTCAAGGTTGAGGAAGATTGTGGGCTTTCTTCTGAGGATGAAATTGCTAGAGCTGTGTATCAGTTGGTTTGCAGAATTCAAGAAGAGGCCTTCTCCGTCTGA 834 48.8 MALEAVVFHQHPFGNNDNNNDLFNLVSSSAPFTFPHDEQHQDLYFLTNQTLNGGGGGSGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIGGAIDFVKQLEQQVHLLSSAQTYVNPCFPPQNAPISHFFTCPHLSSAASSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEEAFSV 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6299622 6301296 + CmaCh11G011200.1 Cma11g01120 303629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01120 277 Gene3D - 71 144 IPR036638 GO:0046983
Cma11g01120 277 Pfam Helix-loop-helix DNA-binding domain 81 132 IPR011598 GO:0046983
Cma11g01120 277 PANTHER MAX DIMERIZATION, MAD 62 275 - -
Cma11g01120 277 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 62 275 - -
Cma11g01120 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 131 IPR011598 GO:0046983
Cma11g01120 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 154 IPR036638 GO:0046983
Cma11g01120 277 MobiDBLite consensus disorder prediction 50 74 - -
Cma11g01120 277 SMART finulus 86 137 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01154 Cma11g01120 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01120 Cma-Chr11:6299622 Cma12g00225 Cma-Chr12:1104808 1.50E-72 dispersed
Cma11g01120 Cma-Chr11:6299622 Cma05g01154 Cma-Chr5:8975120 3.24E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35872 PF00010 HLH 3.50E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01120 - - cpep:111792889 468.774