Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01120 | ATGGCTCTTGAGGCTGTTGTTTTCCATCAGCACCCATTTGGCAACAACGACAACAACAATGATCTCTTCAATTTGGTCTCTTCTTCGGCTCCCTTCACCTTCCCCCATGATGAACAACACCAAGATCTTTACTTTCTCACCAACCAAACACTCAATGGTGGTGGCGGAGGGAGTGGGCGGCCGGCGAGGCGGCGGCGGGGGGGAGGGAGAACCCAAAAGAATAAAGAGGAAATAGAGAATCAAAGAATCACTCATATTACTGTGGAGAGGAACCGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTGATGCCTCACTCCTACGTCCAAAGGGGCGACCAAGCCTCAATCATAGGCGGAGCCATCGACTTTGTGAAGCAGCTTGAGCAGCAAGTACATTTGCTTAGCAGCGCTCAAACATATGTAAACCCCTGTTTTCCCCCTCAAAATGCACCAATCTCTCATTTCTTTACCTGCCCTCACCTCTCCTCTGCTGCTTCCTCCTCCTCCTCCTCCTCCTCCCCCATGTCTTCCAACCAGATTCACTCCCCCATTGCCCACGTTCATGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATTAGCTGTACAAAGTTCCCTAAACAGCTTCTTAAGATCGTCTCTGCTTTGCATTCCTTGCGCCTCTCTGTTCTTCATCTCAATCTCTCCACTGCCCACCAAACTGTGCTCTATTCATTCAGTCTCAAGGTTGAGGAAGATTGTGGGCTTTCTTCTGAGGATGAAATTGCTAGAGCTGTGTATCAGTTGGTTTGCAGAATTCAAGAAGAGGCCTTCTCCGTCTGA | 834 | 48.8 | MALEAVVFHQHPFGNNDNNNDLFNLVSSSAPFTFPHDEQHQDLYFLTNQTLNGGGGGSGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIGGAIDFVKQLEQQVHLLSSAQTYVNPCFPPQNAPISHFFTCPHLSSAASSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEEAFSV | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6299622 | 6301296 | + | CmaCh11G011200.1 | Cma11g01120 | 303629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01120 | 277 | Gene3D | - | 71 | 144 | IPR036638 | GO:0046983 | |
Cma11g01120 | 277 | Pfam | Helix-loop-helix DNA-binding domain | 81 | 132 | IPR011598 | GO:0046983 | |
Cma11g01120 | 277 | PANTHER | MAX DIMERIZATION, MAD | 62 | 275 | - | - | |
Cma11g01120 | 277 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 62 | 275 | - | - | |
Cma11g01120 | 277 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 80 | 131 | IPR011598 | GO:0046983 | |
Cma11g01120 | 277 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 80 | 154 | IPR036638 | GO:0046983 | |
Cma11g01120 | 277 | MobiDBLite | consensus disorder prediction | 50 | 74 | - | - | |
Cma11g01120 | 277 | SMART | finulus | 86 | 137 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01154 | Cma11g01120 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01120 | Cma-Chr11:6299622 | Cma12g00225 | Cma-Chr12:1104808 | 1.50E-72 | dispersed | |
Cma11g01120 | Cma-Chr11:6299622 | Cma05g01154 | Cma-Chr5:8975120 | 3.24E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35872 | PF00010 | HLH | 3.50E-10 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01120 | - | - | cpep:111792889 | 468.774 |