Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01121 ATGGAACCTAACACTTCACCGCCACCAAAATATCATATCCACCGCCACAACTATTCCAATGCCAACCACCACCACCACCACCACCCCCACCACAGTGCCATTCTCAGCTCCAACTCCTTCCTCATCATCATTTCCTCCATCATTTCCATCGCCATTCTCCTCGCCATCCTCCTCCTCATCTTCATGCTCCACCGCCTCAAAACCCCATCAAACCCTGCCACTACCGCCGCCTCCACCGCCGCACAATCCGCCACATTCATCCCCCACACAGCCATCCATTTTGACTCCAGCCCAGAAGTGAAAGGGGGTGGTTGTTTGTATGGTGGGAATTCAGGGAGGATTCCTCAATACAGAATCAGGGGAGTTCAGGTTTTCACTTACAAGGACCTGGAATTGGCCACTGATAATTTTAATGAAGCCAATCTCATTGGGAATGGAAGATTTGGGGCTGTTTACAGAGGGGTTCTTGGAGATGGAGCCGTGGTTGCTGTTAAAATGCTCCACACAGATGGCAAGCACAGGGAACGTGCTTTCAGAATGGAGGTGGATCTGCTGAGCCGCTTGCACTCTCCTTGTTTGGTGGAGTTGCTTGGTTACTGCGCTGACCAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGTACTCTTCATCATCATCTGCATAATCCCAACGCTGAATCTAAGCCATTGGATTGGAATACTAGATTAAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTTCTCCATGAGCATGCAGTTCCATCTGTTATCCATAGAAACTTCAAGTGCACCAATGTTCTGCTAGATCAGGATTTTCGAGCCAAGGTGTCCGATTTCAGTTCGGCCAAGATGGGCTCTGATAAGATCAATGGTCAAATATCTACACAAGTACTCGGAACAACAGGATATCTTGCACCAGAGTATGCTTCAACAGGTAAACTCACAACAAAGTCAGATGTGTATAGCTATGGTGTCGTGCTGCTAGAGCTTTTGACGGGTCGAGTGCCAGTTGATATCAAGCGGCCACAGGGCGAGCACGTTCTTGTCTCATGGGCTCTCCCAAGGCTAACCAATAGAGAAAAAGTAGAGAAAATGATCGACCCAGCCATTCAAGGAAAATACTCAAAGAAGGATCTAATTCAGGTTGCAGCCATTGCAGCAATGTGCGTGCAGCCCGAAGCCGACTACCGACCTCTGATGACCGACGTCATGCAGTCACTGGTTCCTCTCGTTAAGAACCCATCTTCCTCATCTAGATTCTTCAAATGA 1278 48.12 MEPNTSPPPKYHIHRHNYSNANHHHHHHPHHSAILSSNSFLIIISSIISIAILLAILLLIFMLHRLKTPSNPATTAASTAAQSATFIPHTAIHFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKDLELATDNFNEANLIGNGRFGAVYRGVLGDGAVVAVKMLHTDGKHRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNAESKPLDWNTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFSSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVMQSLVPLVKNPSSSSRFFK 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6304589 6306983 - CmaCh11G011210.1 Cma11g01121 303630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01121 425 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Cma11g01121 425 MobiDBLite consensus disorder prediction 16 30 - -
Cma11g01121 425 PANTHER OS01G0750732 PROTEIN 8 421 - -
Cma11g01121 425 Gene3D Phosphorylase Kinase; domain 1 110 212 - -
Cma11g01121 425 Pfam Protein tyrosine and serine/threonine kinase 141 410 IPR001245 GO:0004672|GO:0006468
Cma11g01121 425 SUPERFAMILY Protein kinase-like (PK-like) 115 410 IPR011009 -
Cma11g01121 425 MobiDBLite consensus disorder prediction 1 30 - -
Cma11g01121 425 CDD STKc_IRAK 143 413 - -
Cma11g01121 425 Gene3D Transferase(Phosphotransferase) domain 1 213 422 - -
Cma11g01121 425 ProSiteProfiles Protein kinase domain profile. 137 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01121 425 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 8 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00597 Cma-Chr8:3392676 Cma11g01121 Cma-Chr11:6304589 4.00E-89 dispersed
Cma10g01071 Cma-Chr10:6785035 Cma11g01121 Cma-Chr11:6304589 0 dispersed
Cma11g01121 Cma-Chr11:6304589 Cma19g01016 Cma-Chr19:8728616 2.94E-140 dispersed
Cma11g01121 Cma-Chr11:6304589 Cma11g01895 Cma-Chr11:12565768 1.60E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68909 PF07714 PK_Tyr_Ser-Thr 2.90E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01121 - - csv:101210578 670.233