Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01124 ATGGATCAGCAAGGGCATGGCCAGCCTCAATCCATGGGAGCGGTTGGCAGTGGTGGTCAGATAGCATATGGCAGTAACTTGTACCATCCCGGCCAAATAACTGTAGGCTCGACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCGCAGCTTGGTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTCTGGGCTAATCAGTACCAAGAGATTGAGAAGGTAACGGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGCTCTTGGAATCATACTGAAGAGAACAAGCGCAGAACGCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTCGATTTTCTGGTTGATATCGTGCCTAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCAAGAGGATCAATAACAGTTGGAGGACCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGCAAGCCTGTGATGGACCCGGCTATATATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACACACAAGATCAAGCCCCTCCTGATCAATAG 783 47.25 MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQSHPYMPPQMWQHTQDQAPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6367027 6367809 + CmaCh11G011240.1 Cma11g01124 303633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01124 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
Cma11g01124 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Cma11g01124 260 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982
Cma11g01124 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Cma11g01124 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01076 Cma-Chr10:6907923 Cma11g01124 Cma-Chr11:6367027 4.25E-156 dispersed
Cma11g00030 Cma-Chr11:141365 Cma11g01124 Cma-Chr11:6367027 1.96E-69 dispersed
Cma11g01124 Cma-Chr11:6367027 Cma19g00286 Cma-Chr19:2160452 2.81E-78 dispersed
Cma11g01124 Cma-Chr11:6367027 Cma11g01619 Cma-Chr11:10651697 6.08E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35873 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01124 K08066 - csv:101209664 447.203