Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01133 ATGTCCAAAACCTCAGGGTGCTCCGATGATGGTGGGAGCTTGAGCTTAGAGAATCAACTCAGCCATGGAAGCTCTCAACCCCATCAACAGCCACAGCTTTCAGTTCCCAAGAAGAAAAGGAACTTACCAGGAACACCAGACCCAGATGCGGAAGTGGTAGCGTTATCGCCCGGAACGTTAATGGCAACGAATCGGTTTGTGTGTGAAATATGCAACAAGGGATTTCAAAGAGACCAGAACTTGCAGCTACACAGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAACGGACGAGCGGGAGCGACACGAGGAGGAGGCGGGTGTACGTATGTCCAGAAACGTCGTGTGTCCACCACAATCCAGCGAGAGCGCTCGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAACATGGGGAGAAGAATTGGAAGTGCGAGAAATGCTCTAAAAAATATGCAGTTCATTCGGACTTGAAAGCTCATCTCAAAACTTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACTGTCTTTTCCAGGAGAGATAGCTTCATAACCCACAGAGAATATTGCGATGCCTTAACAGAAGAAAGCAACAAACTAGCTGGTCGAGGAGCAACAATGGCTGCCTCGCCGCCCATAACGCTGCCCCACCACGACCTCATGCCTATCCCTCCAAAGCCCTTTAACCTTTCAGCCGGATCCATGTTTTCATCCTCCATTTCCAACGACCACCACTTTCCCTCTTCCTCCTCCGCCGCCCTCATGTCCGCCACTGCCTTGCTGCAGAAGGCGGCGCAGATGGGAGCTGCCGTCAGTTCGCCCATTATCCAACAAAAGAACGGTTTGGTTACAACAATGGCTCCTTCTTCATTTGGTGGGATGTTGCCCACCACCTGTTTGCAGAAATGCCCACAAGAAAACATTGGCGGAGGTGTGGACATGGGGATGATTGATGACATTCTGATGCTCAATGGGATGTTCGACAAACCGATCGGGGAGGGCGCGAGGAAGACGATGACGTTGGATTTGTTGGGGGCTGAGGGAGGGAAGGGGAGGAAGTTTCAGGCGGAAGAAAGTGTAGGGTTTGGAGGGGTTATGGAGAATGTGGGTTACTTTTGCCACCAAGGGGCCATGGGAAAGCAAGGCCATATGTGA 1161 51.68 MSKTSGCSDDGGSLSLENQLSHGSSQPHQQPQLSVPKKKRNLPGTPDPDAEVVALSPGTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSDTRRRRVYVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKNWKCEKCSKKYAVHSDLKAHLKTCGSKEYKCDCGTVFSRRDSFITHREYCDALTEESNKLAGRGATMAASPPITLPHHDLMPIPPKPFNLSAGSMFSSSISNDHHFPSSSSAALMSATALLQKAAQMGAAVSSPIIQQKNGLVTTMAPSSFGGMLPTTCLQKCPQENIGGGVDMGMIDDILMLNGMFDKPIGEGARKTMTLDLLGAEGGKGRKFQAEESVGFGGVMENVGYFCHQGAMGKQGHM 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6455312 6458996 + CmaCh11G011330.1 Cma11g01133 303642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01133 386 Pfam Zinc-finger of C2H2 type 66 88 - -
Cma11g01133 386 MobiDBLite consensus disorder prediction 1 51 - -
Cma11g01133 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Cma11g01133 386 SUPERFAMILY beta-beta-alpha zinc fingers 65 164 IPR036236 -
Cma11g01133 386 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 13 204 - -
Cma11g01133 386 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 241 291 - -
Cma11g01133 386 MobiDBLite consensus disorder prediction 1 36 - -
Cma11g01133 386 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 241 291 - -
Cma11g01133 386 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 204 - -
Cma11g01133 386 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Cma11g01133 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 172 IPR013087 -
Cma11g01133 386 Gene3D Classic Zinc Finger 44 115 - -
Cma11g01133 386 Gene3D Classic Zinc Finger 122 202 - -
Cma11g01133 386 SMART c2h2final6 144 164 IPR013087 -
Cma11g01133 386 SMART c2h2final6 109 139 IPR013087 -
Cma11g01133 386 SMART c2h2final6 66 88 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01133 Cma-Chr11:6455312 Cma01g01894 Cma-Chr1:12396752 4.96E-103 dispersed
Cma11g01133 Cma-Chr11:6455312 Cma08g00775 Cma-Chr8:4677786 3.23E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35874 PF00096 zf-C2H2 0.0037 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01133 - - cpep:111792882 657.136