Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01133 | ATGTCCAAAACCTCAGGGTGCTCCGATGATGGTGGGAGCTTGAGCTTAGAGAATCAACTCAGCCATGGAAGCTCTCAACCCCATCAACAGCCACAGCTTTCAGTTCCCAAGAAGAAAAGGAACTTACCAGGAACACCAGACCCAGATGCGGAAGTGGTAGCGTTATCGCCCGGAACGTTAATGGCAACGAATCGGTTTGTGTGTGAAATATGCAACAAGGGATTTCAAAGAGACCAGAACTTGCAGCTACACAGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAACGGACGAGCGGGAGCGACACGAGGAGGAGGCGGGTGTACGTATGTCCAGAAACGTCGTGTGTCCACCACAATCCAGCGAGAGCGCTCGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAACATGGGGAGAAGAATTGGAAGTGCGAGAAATGCTCTAAAAAATATGCAGTTCATTCGGACTTGAAAGCTCATCTCAAAACTTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACTGTCTTTTCCAGGAGAGATAGCTTCATAACCCACAGAGAATATTGCGATGCCTTAACAGAAGAAAGCAACAAACTAGCTGGTCGAGGAGCAACAATGGCTGCCTCGCCGCCCATAACGCTGCCCCACCACGACCTCATGCCTATCCCTCCAAAGCCCTTTAACCTTTCAGCCGGATCCATGTTTTCATCCTCCATTTCCAACGACCACCACTTTCCCTCTTCCTCCTCCGCCGCCCTCATGTCCGCCACTGCCTTGCTGCAGAAGGCGGCGCAGATGGGAGCTGCCGTCAGTTCGCCCATTATCCAACAAAAGAACGGTTTGGTTACAACAATGGCTCCTTCTTCATTTGGTGGGATGTTGCCCACCACCTGTTTGCAGAAATGCCCACAAGAAAACATTGGCGGAGGTGTGGACATGGGGATGATTGATGACATTCTGATGCTCAATGGGATGTTCGACAAACCGATCGGGGAGGGCGCGAGGAAGACGATGACGTTGGATTTGTTGGGGGCTGAGGGAGGGAAGGGGAGGAAGTTTCAGGCGGAAGAAAGTGTAGGGTTTGGAGGGGTTATGGAGAATGTGGGTTACTTTTGCCACCAAGGGGCCATGGGAAAGCAAGGCCATATGTGA | 1161 | 51.68 | MSKTSGCSDDGGSLSLENQLSHGSSQPHQQPQLSVPKKKRNLPGTPDPDAEVVALSPGTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSDTRRRRVYVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKNWKCEKCSKKYAVHSDLKAHLKTCGSKEYKCDCGTVFSRRDSFITHREYCDALTEESNKLAGRGATMAASPPITLPHHDLMPIPPKPFNLSAGSMFSSSISNDHHFPSSSSAALMSATALLQKAAQMGAAVSSPIIQQKNGLVTTMAPSSFGGMLPTTCLQKCPQENIGGGVDMGMIDDILMLNGMFDKPIGEGARKTMTLDLLGAEGGKGRKFQAEESVGFGGVMENVGYFCHQGAMGKQGHM | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6455312 | 6458996 | + | CmaCh11G011330.1 | Cma11g01133 | 303642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01133 | 386 | Pfam | Zinc-finger of C2H2 type | 66 | 88 | - | - | |
Cma11g01133 | 386 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cma11g01133 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 88 | IPR013087 | - | |
Cma11g01133 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 164 | IPR036236 | - | |
Cma11g01133 | 386 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 13 | 204 | - | - | |
Cma11g01133 | 386 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 241 | 291 | - | - | |
Cma11g01133 | 386 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cma11g01133 | 386 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 241 | 291 | - | - | |
Cma11g01133 | 386 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 13 | 204 | - | - | |
Cma11g01133 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
Cma11g01133 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 144 | 172 | IPR013087 | - | |
Cma11g01133 | 386 | Gene3D | Classic Zinc Finger | 44 | 115 | - | - | |
Cma11g01133 | 386 | Gene3D | Classic Zinc Finger | 122 | 202 | - | - | |
Cma11g01133 | 386 | SMART | c2h2final6 | 144 | 164 | IPR013087 | - | |
Cma11g01133 | 386 | SMART | c2h2final6 | 109 | 139 | IPR013087 | - | |
Cma11g01133 | 386 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01133 | Cma-Chr11:6455312 | Cma01g01894 | Cma-Chr1:12396752 | 4.96E-103 | dispersed | |
Cma11g01133 | Cma-Chr11:6455312 | Cma08g00775 | Cma-Chr8:4677786 | 3.23E-104 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35874 | PF00096 | zf-C2H2 | 0.0037 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01133 | - | - | cpep:111792882 | 657.136 |