Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01149 | ATGGGGGCTAAATTTTCAAAGCCGAGTCAGGCGAAGGTGGAAAACCTTAGTCTGCAACACCATCTCATCAATTATCTATCAAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCCGGCTATGATCTTGACATGTCATACATCACAGATCATGTTCTGGCAATGTCATTCCCTGCCGAACGTATGCGTGCAATGTATCGTAACCCCCTATGGCAGGTAAAGTCCGTATTGGACATGAGGCATCAAGGACACTACAAGATCTATAATCTTTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGTGTGGAGTCATTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAACTTTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCAGTTATACATTGCATGGCTGGAAAAGGTCGAACTGGATTGATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCACCAGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACTACCAATAATGAAGGAGTATCAATTCCAAGCCAACGACGGTATGTGGGATACTGGGCAAAGTGTCTTTCCTTTCCCAAGGGAGTTTATAATGGACCACCCGAGGTGAAGTTGCCCAAACCGTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACAGTGAATCAATTTTCTTTGTTGTCTCAGAATTGCAGGAGATTCCTTCTCAGCTGTACCGTCCATCTATGGAACTTACCAGGAATCGTTGCAGACAATTCAAGAAAGGTTATGAGAGAAATGACAGTCCTCGTTACTTTTTATCTTTTGTTGAAGGCGAAAACGAAGGGAATGAACCAGAACTCGAACCCCATCTTGTTGTTCAAATGGACACCGAGTGTTCTGCACTGTACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTCGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTGAGGTTGCCGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCGAATGCAAAACACTCATTTTTTACTTCCTCAGATGACGAAAATGCTAGTGATGATGTTTTAAAATCTCAATGTTCTTCGTCAGACAGATCGGAAGCGAACATTTTGAAATCACATTATCTCTGGTAA | 1311 | 42.94 | MGAKFSKPSQAKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKLFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSPEDALQLYAQRRTTNNEGVSIPSQRRYVGYWAKCLSFPKGVYNGPPEVKLPKPCRRELQRIRLYDTVNSESIFFVVSELQEIPSQLYRPSMELTRNRCRQFKKGYERNDSPRYFLSFVEGENEGNEPELEPHLVVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLPDLDKVGKKGRSICGPSFCLELVFGPANAKHSFFTSSDDENASDDVLKSQCSSSDRSEANILKSHYLW | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6608799 | 6613787 | + | CmaCh11G011490.1 | Cma11g01149 | 303658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01149 | 436 | Pfam | Tyrosine phosphatase family | 144 | 186 | IPR026893 | GO:0004721 | |
Cma11g01149 | 436 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
Cma11g01149 | 436 | PANTHER | BNAC03G16750D PROTEIN | 1 | 407 | - | - | |
Cma11g01149 | 436 | Gene3D | - | 279 | 397 | - | - | |
Cma11g01149 | 436 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 129 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
Cma11g01149 | 436 | Pfam | C2 domain of PTEN tumour-suppressor protein | 318 | 392 | IPR014020 | - | |
Cma11g01149 | 436 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
Cma11g01149 | 436 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 205 | IPR029021 | - | |
Cma11g01149 | 436 | SMART | PTEN_C2_2 | 223 | 394 | IPR014020 | - | |
Cma11g01149 | 436 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 395 | IPR014020 | - | |
Cma11g01149 | 436 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791 | |
Cma11g01149 | 436 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
Cma11g01149 | 436 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 295 | 394 | IPR035892 | - | |
Cma11g01149 | 436 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 407 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00685 | Cma-Chr7:3010426 | Cma11g01149 | Cma-Chr11:6608799 | 1.26E-43 | dispersed | |
Cma11g01149 | Cma-Chr11:6608799 | Cma14g00570 | Cma-Chr14:2850326 | 1.03E-52 | dispersed | |
Cma11g01149 | Cma-Chr11:6608799 | Cma11g01730 | Cma-Chr11:11504002 | 3.36E-47 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01149 | K01110 | - | csv:101212127 | 784.252 |