Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01149 ATGGGGGCTAAATTTTCAAAGCCGAGTCAGGCGAAGGTGGAAAACCTTAGTCTGCAACACCATCTCATCAATTATCTATCAAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCCGGCTATGATCTTGACATGTCATACATCACAGATCATGTTCTGGCAATGTCATTCCCTGCCGAACGTATGCGTGCAATGTATCGTAACCCCCTATGGCAGGTAAAGTCCGTATTGGACATGAGGCATCAAGGACACTACAAGATCTATAATCTTTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGTGTGGAGTCATTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAACTTTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCAGTTATACATTGCATGGCTGGAAAAGGTCGAACTGGATTGATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCACCAGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACTACCAATAATGAAGGAGTATCAATTCCAAGCCAACGACGGTATGTGGGATACTGGGCAAAGTGTCTTTCCTTTCCCAAGGGAGTTTATAATGGACCACCCGAGGTGAAGTTGCCCAAACCGTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACAGTGAATCAATTTTCTTTGTTGTCTCAGAATTGCAGGAGATTCCTTCTCAGCTGTACCGTCCATCTATGGAACTTACCAGGAATCGTTGCAGACAATTCAAGAAAGGTTATGAGAGAAATGACAGTCCTCGTTACTTTTTATCTTTTGTTGAAGGCGAAAACGAAGGGAATGAACCAGAACTCGAACCCCATCTTGTTGTTCAAATGGACACCGAGTGTTCTGCACTGTACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTCGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTGAGGTTGCCGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCGAATGCAAAACACTCATTTTTTACTTCCTCAGATGACGAAAATGCTAGTGATGATGTTTTAAAATCTCAATGTTCTTCGTCAGACAGATCGGAAGCGAACATTTTGAAATCACATTATCTCTGGTAA 1311 42.94 MGAKFSKPSQAKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKLFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSPEDALQLYAQRRTTNNEGVSIPSQRRYVGYWAKCLSFPKGVYNGPPEVKLPKPCRRELQRIRLYDTVNSESIFFVVSELQEIPSQLYRPSMELTRNRCRQFKKGYERNDSPRYFLSFVEGENEGNEPELEPHLVVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLPDLDKVGKKGRSICGPSFCLELVFGPANAKHSFFTSSDDENASDDVLKSQCSSSDRSEANILKSHYLW 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6608799 6613787 + CmaCh11G011490.1 Cma11g01149 303658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01149 436 Pfam Tyrosine phosphatase family 144 186 IPR026893 GO:0004721
Cma11g01149 436 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Cma11g01149 436 PANTHER BNAC03G16750D PROTEIN 1 407 - -
Cma11g01149 436 Gene3D - 279 397 - -
Cma11g01149 436 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311|GO:0016791
Cma11g01149 436 Pfam C2 domain of PTEN tumour-suppressor protein 318 392 IPR014020 -
Cma11g01149 436 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cma11g01149 436 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 205 IPR029021 -
Cma11g01149 436 SMART PTEN_C2_2 223 394 IPR014020 -
Cma11g01149 436 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Cma11g01149 436 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Cma11g01149 436 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Cma11g01149 436 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 295 394 IPR035892 -
Cma11g01149 436 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00685 Cma-Chr7:3010426 Cma11g01149 Cma-Chr11:6608799 1.26E-43 dispersed
Cma11g01149 Cma-Chr11:6608799 Cma14g00570 Cma-Chr14:2850326 1.03E-52 dispersed
Cma11g01149 Cma-Chr11:6608799 Cma11g01730 Cma-Chr11:11504002 3.36E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01149 K01110 - csv:101212127 784.252