Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01151 ATGGCGACCTCCAAATCCCAAAGGTCTCCTGAGGAGGTGGAAGGCATTATCCTTCGCAAAGTTTTCCTTGTCTCTCTCACCCCTCCTTCCGATTCCGATTCCGATTCTCGCACCGTCTATCTCGAGCAAACCGCCGCCGAACTCCTTAGCGAAGGCAAGCAATTGAGGATTTCGAGGGATGTAATGGAGCGTATTATAATTGATCGTCTATCCGGTAATTTCCTCTCTGCCGAACCTATTTTTCAGTACCTAATCGGCTGCTATCGTCGGGCTCACGACGAGACTAAGAAAATTGCCTCCATGAAGGATAGGAATTTGCGGTCTGAGATTGAGATGGCGCTCAAACAAGCCAAGAAGTTGACGGTTTCCTATTGTAGGATTCATTTGGGGAATCCTGAATTGTTTTCGGGTGGGGATTTGGGTACTAACTCCACTACTTCGCCTTTGCTTCCTTTGATTTTCTCTGAAGTTGGTAGCTCCATGGATGGATTTGGGGCTAGTACCAGTGTTGGTGGAGCTCTTCAGTGCCCTCCGGGTTTCATGGACGAGTTTTTCCGGGATTCGGATTTTGATACATTAGACCCCATATTGAGGGGGTTGTACGAGGATTTGAGGGGTACCGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCCTTAAGGGCACTTAGGTTTCTTGTTAGTTTTCCCATTGGGGCTAAATCTTTGGTTAATCATCCATGGTGGATTCCCCCTGGTAAATATTCCAATGGCCGTGTCATTGAGAGGACAAGTATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCCGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCAATGCTTTTCAGAAGCATCAACTCGTAGACCATCTGATTTACTGTCTTCATTCACTACAATTAAAACAGTCATGAATAACTTATATGATGGTCTTGCGGAAGTTCTTCTCTCTCTTCTTAAGAACACGGAGACCCGTGAAAATGTTCTTGAGTATCTTGCAGAAGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTCAGTGCCATCATGCTTCGTCTTTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCGAAATATGTATGTTATGGTAACCGCTTGGAGTTAAGAGGATTAACTGCTCTACATGCATCGTCTGAAGAAGTTACAGACTGGATTAATAATGGTACTCAGTTGAAAACTGATAACTCCGGGCAGTTCAATGACAGTGAAAGTCGCTTGCTGCAATCCCAAGAAGCTTCTAGTTCTGGCAGTAATGCTACAATTGAATCTTCTACTGCAAAGGCAAGATTGAATAGTGAGAAGACTAGGTACCCTTTCATATGTGAGTGTTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCGGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGGCCACACTCAAAGCCATGCAAGGACAAGGACCTGCTCCACAGCTTGAAATGGATGTAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTTTGAAGCTCAAATACTGAGGGACGGGAGTCTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTATGGTTAGTTGGTTTGATTGGTGGATTTAAAATGCCTCTTCCATCAAGTTGCCCGATGGAATTTGCATCCATGACAGAGCATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCCCGAATTCCAAAAGCTTTGGACGGTATCAATTTGGATGATTTTATGAACTTCATCATTATGTTTATGGCAAGTCCGGAATATATTAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTCAACTGCTGGATTCCTCGTAGAAGTGGTTCATCTGTAACAGCAACATTATTTGAAGGCCACCAACTATCACTCGAGTATCTTGTTAGGAATCTCTTAAAGCTTTATGTGGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCCGAACTTCTTGAATACCTTTGGCAGGTTCCTAGTCATCGTAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGCCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACTGCAGAATGGGAGCAGCGACCTGCTCAAGAGAGGCAGGAGAGAACTAGGCTATTTCACTCCCAAGAAAATATCATCCGGATTGACATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACAACAGAGCAAATCACAGCTCCTTTCCTACTTCCAGAGATGGTCGAACGGGTGGCCAGCATGCTTAATTATTTCCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTACGAATTCCGTCCAAGAGAGTTGCTTAAGCAGATTGTTCACATATATGTTCATCTGGCGAGAGGCGATAAGGAGAATATTTTCCCAGCTGCCATTTCGAAGGACGGCAGATCATATAACGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTAGACGAATTGGAGAAGATGGTAGGATAATACAGGAATTTATTGCTCTTGGTAACAAGGCGAAGGATGCAGCTTCAGAGGCCATGGATGCTGAGGCTACTCTAGGAGATATACCGGATGAATTCCTTGACCCGATCCAATATACTTTAATGAAGGATCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATTCAAAGACATCTCCTTAGCGATAGCACCGACCCGTTCAACCGGTCTCATCTGACTTCGGACATGCTAATACCAAACGAAGAACTGAAAGCAAGGATCAAAGAGTTCATCATGTCAAAAAAATTGAAGAGGCAACCGGACGGAGGGGTTGCGATGCAGAGTAGCAAGGCGACGATCCAACCCACAAGCGGAGAAATGTTGATCGATTAA 3129 43.3 MATSKSQRSPEEVEGIILRKVFLVSLTPPSDSDSDSRTVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSGNFLSAEPIFQYLIGCYRRAHDETKKIASMKDRNLRSEIEMALKQAKKLTVSYCRIHLGNPELFSGGDLGTNSTTSPLLPLIFSEVGSSMDGFGASTSVGGALQCPPGFMDEFFRDSDFDTLDPILRGLYEDLRGTVLKVSALGNFQQPLRALRFLVSFPIGAKSLVNHPWWIPPGKYSNGRVIERTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTDWINNGTQLKTDNSGQFNDSESRLLQSQEASSSGSNATIESSTAKARLNSEKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLATLKAMQGQGPAPQLEMDVARLEKEIELYSQEKLCFEAQILRDGSLIQQALTFYRLMVVWLVGLIGGFKMPLPSSCPMEFASMTEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTTEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPRELLKQIVHIYVHLARGDKENIFPAAISKDGRSYNEQLFNAAAVVLRRIGEDGRIIQEFIALGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNEELKARIKEFIMSKKLKRQPDGGVAMQSSKATIQPTSGEMLID 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6634185 6641073 - CmaCh11G011510.1 Cma11g01151 303660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01151 1042 Coils Coil 521 548 - -
Cma11g01151 1042 PANTHER - 1 1017 - -
Cma11g01151 1042 PANTHER UBIQUITINATION FACTOR E4 1 1017 IPR045132 GO:0000151|GO:0030433|GO:0034450
Cma11g01151 1042 SUPERFAMILY RING/U-box 935 1016 - -
Cma11g01151 1042 CDD RING-Ubox_UBE4A 945 1014 - -
Cma11g01151 1042 Pfam Ubiquitin elongating factor core 261 926 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Cma11g01151 1042 MobiDBLite consensus disorder prediction 425 460 - -
Cma11g01151 1042 ProSiteProfiles U-box domain profile. 942 1016 IPR003613 GO:0004842|GO:0016567
Cma11g01151 1042 MobiDBLite consensus disorder prediction 1020 1042 - -
Cma11g01151 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 942 1020 IPR013083 -
Cma11g01151 1042 SMART Ubox_2 946 1009 IPR003613 GO:0004842|GO:0016567
Cma11g01151 1042 Pfam U-box domain 943 1014 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01151 Cma-Chr11:6634185 Cma14g00569 Cma-Chr14:2842867 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01151 K10597 - csv:101211398 1898.25