Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01183 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAACGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATCGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACTATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAAAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTTCAAAGATTTTGGAGGAGCTAAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATAAATAAAGAAAGGTACCAAATTCCAGAGGACTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGTTTAATCTCATTGTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCAGTAACCAATCCTTCAGTTTCCACTAAGAGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAG 1149 42.04 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKETSEKPTKQAITKKSKSSGGKRK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6914194 6923448 - CmaCh11G011830.1 Cma11g01183 303692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01183 382 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Cma11g01183 382 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Cma11g01183 382 Gene3D - 223 286 - -
Cma11g01183 382 SMART xpgn3 1 108 IPR006085 GO:0004518
Cma11g01183 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cma11g01183 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cma11g01183 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cma11g01183 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cma11g01183 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cma11g01183 382 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Cma11g01183 382 CDD PIN_FEN1 4 332 - -
Cma11g01183 382 MobiDBLite consensus disorder prediction 334 382 - -
Cma11g01183 382 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Cma11g01183 382 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Cma11g01183 382 SMART 53exo3 29 299 IPR002421 GO:0003677
Cma11g01183 382 Gene3D - 10 222 - -
Cma11g01183 382 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 375 IPR006084 -
Cma11g01183 382 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cma11g01183 382 PANTHER FLAP ENDONUCLEASE 1 1 375 - -
Cma11g01183 382 SMART xpgineu 147 219 IPR006086 GO:0004518
Cma11g01183 382 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Cma11g01183 382 MobiDBLite consensus disorder prediction 337 356 - -
Cma11g01183 382 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Cma11g01183 382 CDD H3TH_FEN1-Euk 222 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01183 Cma-Chr11:6914194 Cma18g00445 Cma-Chr18:2455435 1.47E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01183 K04799 - csv:101204273 712.605