Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01184 ATGAGTAGACCTATACTTAACTTTGGACCAAATACATGTTCGAGTGGGAAGGAACAGAGCAGCAGAGCCATGGCTAAGCTTTTGCTTCTTGGGTTTCTCTTATCAATGGCTTTTACCAAATGGGTTCATGCCTTTTACCCATTTAATCTCTCTGATTCATCGCTCTTCGATTCTTATGAAGCTTCCTTTGCTGTCACCGCTACTCCTCTAATGGTGCCTCTCACTCTCATTCATGGAGCTGATGCAAAACGAGCAGTCTGTTTGGATGGCACATTGCCTGGATATCACTTACACCGTGGATATGGGTCGGGAGCTAATAGCTGGCTTGTGCAATTGGAGGGGGGTGGATGGTGTAATAATAGAAGGAATTGTGTCTACCGGAAGAATACGAGGCGTGGATCGTCGAGATTTATGGAGAAGCAAATACCATTTACAGGAATTCTGAGCAACAAAGCTGAAGAAAATCCTGATTTTTTTAACTGGAACAGAGTAAAGGTTCGTTACTGTGATGGCGCCTCGTTCACTGGGGATTCTGAGAACAAGGCTGAACAGTTGCAATTTAGAGGACAGCGGATTTGGTTGGCTGCAATGGAAGAATTGAGGGCCAAGGGGATGCGATTTGCGAAACAGGCCTTGCTTTCTGGCTGCTCGGCGGGAGGTTTGGCATCGATTCTACACTGTGATGAGTTTCGAGACTTATTTCCTAGTAATACTAAAGTGAAGTGTCTGAGTGATGCTGGACTATTCCTTGACGTGGCTGATATATCTGGTGGGCATTCTATTAGGAACTTATTTGGTGGTGTGGTGAGCTATCAGGGAGCTAAAAGGAATCTGCCATCCTTTTGTACAAACCATCTCGATCCAACTTCGTGTTTCTTCCCACAAAACATAATTGCTGGAATCAAAACGCCACTGTTTCTTGTCAATGCAGCATACGATTCCTGGCAGATACAATCTAGTCTTGCCCCACCTTCCCTCGACCCGGCCGGGTACTGGCATGATTGTAGGCTGAACCATGCAAAATGTAACCAACCTCAGATTCAATTTCTTCAAGGATTCAGGAACCAAATGTTGAATGCTGTAAGGGATTTCTCAAAATCTTACAAAAATGGATTGTTTATTAATTCATGTTTTGCTCACTGCCAAACCGAGCGACAGGATACGTGGTTCAGCGACAATTCCCCCGTCATCGGAAACAAGCCAATTGCTCTGGCTGTAGGAGACTGGTACTTCGACCGAGCAACTGTGAAAGCGGTGGATTGTGCGTATCCTTGTGACAGGAGTTGCCACCATCTGGTTTTTAGAAGCGGGTAG 1314 45.36 MSRPILNFGPNTCSSGKEQSSRAMAKLLLLGFLLSMAFTKWVHAFYPFNLSDSSLFDSYEASFAVTATPLMVPLTLIHGADAKRAVCLDGTLPGYHLHRGYGSGANSWLVQLEGGGWCNNRRNCVYRKNTRRGSSRFMEKQIPFTGILSNKAEENPDFFNWNRVKVRYCDGASFTGDSENKAEQLQFRGQRIWLAAMEELRAKGMRFAKQALLSGCSAGGLASILHCDEFRDLFPSNTKVKCLSDAGLFLDVADISGGHSIRNLFGGVVSYQGAKRNLPSFCTNHLDPTSCFFPQNIIAGIKTPLFLVNAAYDSWQIQSSLAPPSLDPAGYWHDCRLNHAKCNQPQIQFLQGFRNQMLNAVRDFSKSYKNGLFINSCFAHCQTERQDTWFSDNSPVIGNKPIALAVGDWYFDRATVKAVDCAYPCDRSCHHLVFRSG 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6960985 6965818 + CmaCh11G011840.1 Cma11g01184 303693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01184 437 PANTHER NOTUM-RELATED 68 435 IPR004963 GO:0016787
Cma11g01184 437 PANTHER PECTIN ACETYLESTERASE 2 68 435 - -
Cma11g01184 437 Pfam Pectinacetylesterase 67 415 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00595 Cma-Chr4:2999765 Cma11g01184 Cma-Chr11:6960985 2.56E-148 dispersed
Cma07g00994 Cma-Chr7:5119967 Cma11g01184 Cma-Chr11:6960985 3.24E-149 dispersed
Cma10g01190 Cma-Chr10:8792600 Cma11g01184 Cma-Chr11:6960985 0 dispersed
Cma11g01184 Cma-Chr11:6960985 Cma16g00121 Cma-Chr16:561081 5.88E-145 dispersed
Cma11g01184 Cma-Chr11:6960985 Cma16g00513 Cma-Chr16:2635616 2.52E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01184 K19882 - csv:101218273 788.104