Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01192 ATGGCTTATGATGATGCTGCTGCTGAGAACAGGAAACGCTATGCCATCATCGGCGTCTCGTCGATGCTACTGGTTGCGATGGTGGTGGCGGTGACCGTCGGAGTTAACCTAAACCAAGATGGAACCAGCGATCCGGCCACCGGAAAGAAGGCTCATGAAATATCTTCTTCTATGAAAGCCATCAAAGCCATTTGCCGGCCTACTGATTACAAGCGGGAATGTGTTGATAGCCTTAAGGGGTCCGGAAAATCGGACCCCAAGGAATTGGTTCAGGTTGGGTTCAAGGCTGCCATGAAACTCATCCAAGCCGCTGCTAAGAAATCTCTCACCTTAAGACAGATTGAGAAAGACCCTAGAGCTTCCCAAGCCCTTGCTGGGTGTAAGGAGCTCATGGATTTTTCTGTTGACGAACTTAAATTCTCCATACAAAAGCTTGGCGCCTTTGACATTAGTAAACTCGATGAGATGTTGATCGATATTAAGATCTGGCTTAGTGCCGTTATTACTTATCAGGAAACTTGCTTGGATGGGTTTGCGAACTCGACAGGGGACGCATCAGAGAAGATGAAGAAGGCATTGAAGATATCAATGCGATTGAGCAGCAATGGGTTGGCGATGGTGACGGAGTTGTCCTCCATGTTGACGGAGTTGCAAATTCCAGGGATCAACCGACGACTTCTCAGCATTCCAGTTCTCGGACACGAGGATTACCCCGAGTGGGCCGGCCCCGGTATGCAGCGTCTCCTCGCCGGTTCTCCAGCGAAGAGGAAGCCAAACATTGTGGTGGCTAAGGATGGAAGTGGGCAGTACAAAACCATTCAAGAGGCTATAAACAAAGTTCCCAAGAGGAAGAACAACGCAACTTTTGTAATCCATATCAAGCAAGGAGTGTACAAAGAATACGTTGTGATTGGAAAAAAGCTAACCCATTTGATGCTCATTGGTGATGGCCCTAAAAAGACCATAATCTCGGGAAATAAGAACTTCGTCGATGGCACGACCACGTTCAAGACCGCTACCGTTGCTGTTTCCGCAGAGCACTTCATGGCTAGAGACATCGGATTCGAGAACACGGCAGGACCACATAAGCACCAAGCCGTAGCATTACGAGTCCAAGCAGACAAAGTAGTATTCTTCAACTGCGAGATGCATGGCTACCAAGACACCCTCTACGTACACACCATGCGTCAATTCTACCGTGATTGCACCATCTCCGGCACGATCGACTTCGTGTTTGGGGACGCAGCGGCCGTGTTCCAAAACTGCAGCTTCTTGGTGCGCAAGCCGCTCCCGAACCAACAAAACATCGTGACGGCACACGGGCGGAAGGAGCGGCGGCAGCCCTCGGCCCTGATCATCCAAAATTCAAAGTTCAAGCCAGATGCGGATCTGGTGCCAGTGAAGAAGCAGTTCCGGTCGTACCTAGGGCGGCCGTGGAAGGAATATTCTAGAACGATCATAATGGAATCATACATCGATGACATAATAGAGCCGGAAGGGTGGCTGCCGTGGGAGGGGGACTGGGGGCTGAGGACATGCTTTTACACGGAGTTCAACAACTACGGGCCGGGATCGGGGAAGTCGAAGAGGGTGAAGTGGAGGGGAATCAAGAGCATTACGGCGCAGCACGCGGTGGACTTTACTCCGGGGAGGTTCATATTGGGGGATAGATGGATTAAAGCCACCGGAATTCCGTACGTTTCAGGCATGACCAAACCCAACGCCGGAGTTGCTAATTGA 1740 50.69 MAYDDAAAENRKRYAIIGVSSMLLVAMVVAVTVGVNLNQDGTSDPATGKKAHEISSSMKAIKAICRPTDYKRECVDSLKGSGKSDPKELVQVGFKAAMKLIQAAAKKSLTLRQIEKDPRASQALAGCKELMDFSVDELKFSIQKLGAFDISKLDEMLIDIKIWLSAVITYQETCLDGFANSTGDASEKMKKALKISMRLSSNGLAMVTELSSMLTELQIPGINRRLLSIPVLGHEDYPEWAGPGMQRLLAGSPAKRKPNIVVAKDGSGQYKTIQEAINKVPKRKNNATFVIHIKQGVYKEYVVIGKKLTHLMLIGDGPKKTIISGNKNFVDGTTTFKTATVAVSAEHFMARDIGFENTAGPHKHQAVALRVQADKVVFFNCEMHGYQDTLYVHTMRQFYRDCTISGTIDFVFGDAAAVFQNCSFLVRKPLPNQQNIVTAHGRKERRQPSALIIQNSKFKPDADLVPVKKQFRSYLGRPWKEYSRTIIMESYIDDIIEPEGWLPWEGDWGLRTCFYTEFNNYGPGSGKSKRVKWRGIKSITAQHAVDFTPGRFILGDRWIKATGIPYVSGMTKPNAGVAN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7073950 7076059 + CmaCh11G011920.1 Cma11g01192 303701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01192 579 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cma11g01192 579 SUPERFAMILY Pectin lyase-like 257 569 IPR011050 -
Cma11g01192 579 CDD PMEI-like_3 63 212 - -
Cma11g01192 579 Pfam Pectinesterase 259 556 IPR000070 GO:0030599|GO:0042545
Cma11g01192 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Cma11g01192 579 PANTHER PECTINESTERASE 16 572 - -
Cma11g01192 579 Gene3D - 253 570 IPR012334 -
Cma11g01192 579 Pfam Plant invertase/pectin methylesterase inhibitor 60 206 IPR006501 GO:0004857
Cma11g01192 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 210 IPR006501 GO:0004857
Cma11g01192 579 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Cma11g01192 579 SMART PMEI_2 56 206 IPR006501 GO:0004857
Cma11g01192 579 PANTHER PECTINESTERASE 16 572 - -
Cma11g01192 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01133 Cma-Chr10:7823071 Cma11g01192 Cma-Chr11:7073950 0 dispersed
Cma11g01192 Cma-Chr11:7073950 Cma17g00341 Cma-Chr17:1855462 0 dispersed
Cma11g01192 Cma-Chr11:7073950 Cma08g01239 Cma-Chr8:7592616 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01192 K01051 - csv:101207393 963.755