Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g01196 | ATGGGTTTAAAAACCCTGATTACCACCTTCGTCATCCTTCGAGCAGCTGCACCACGCGTCTCGCAAACTCGGCTAGCTGCAATGGGTATTGATCTCGTAGCGGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTACCTTAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGTACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCTTGTTCATGAGCAGGGTCAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGAAAGCAAAATTGCCGTTGTTGTTGGGACTATTACTGATGATATTCGCGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGATTTACAGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGTGAGTGTTTGACATTTGATCAGCTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTTCTCCTTAGAGGTTCCAAGAACTCCAGAGAGGCCGTGAAGCATTTTGGTCCAGCACCAGGTGTGCCCCACAGCCACTCCAAGCCTTATGTGAGGTCCAAGGGAAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGA | 645 | 48.68 | MGLKTLITTFVILRAAAPRVSQTRLAAMGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 7101418 | 7103946 | - | CmaCh11G011960.1 | Cma11g01196 | 303705 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g01196 | 214 | Gene3D | - | 28 | 214 | - | - | |
| Cma11g01196 | 214 | Pfam | Ribosomal protein 60S L18 and 50S L18e | 29 | 214 | IPR021131 | - | |
| Cma11g01196 | 214 | PANTHER | BNAC02G39900D PROTEIN | 24 | 214 | - | - | |
| Cma11g01196 | 214 | SUPERFAMILY | Ribosomal proteins L15p and L18e | 47 | 166 | IPR036227 | - | |
| Cma11g01196 | 214 | MobiDBLite | consensus disorder prediction | 191 | 214 | - | - | |
| Cma11g01196 | 214 | MobiDBLite | consensus disorder prediction | 177 | 214 | - | - | |
| Cma11g01196 | 214 | PANTHER | 60S RIBOSOMAL PROTEIN L18 | 24 | 214 | IPR000039 | GO:0003735|GO:0005840|GO:0006412 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g01132 | Cma11g01196 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g01097 | Cma-Chr5:8641333 | Cma11g01196 | Cma-Chr11:7101418 | 1.60E-129 | dispersed | |
| Cma11g01196 | Cma-Chr11:7101418 | Cma12g01052 | Cma-Chr12:8322164 | 6.66E-130 | dispersed | |
| Cma11g01196 | Cma-Chr11:7101418 | Cma10g01132 | Cma-Chr10:7805763 | 2.31E-132 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g01196 | K02883 | - | csv:105436293 | 357.066 |