Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01201 ATGCGACCAATTTTGATGAAAGGCCATGAACGGCCATTGACTTTCCTTAAGTACAACCGGGATGGCGATCTCCTTTTCTCCTGCGCCAAGGATCTCAATCCCACCGTCTGGTTCGCCGACAACGGCGAGCGATTGGGGACTTATCGTGGTCACAATGGTGCCGTTTGGTGCTGCGATGTCTCTAGAGATTCAATGCGGCTCATCACCGGCAGTGCAGATCAGACGGCCAAACTGTGGAATGTGCAAACTGGACAACAACTGTTCTCTTTCAATTTTGACTCACCTGCTAGGGCGGTTGATTTCTCTGTCGGCGATAAGCTTGCTGTGATTACCACCGATCCTTTCATGGAATTTCCCTCTGCTATTCACGTTAAACGCATTGCCAGAAACCCCTCGGAACAGACTGGTGAATCTGTGCTTCTTCTGACGGGTCCTCAGGGAAGAATCAACAGAGCTGTTTGGGGGCCTCTAAATAAAACAATTATAAGTGCAGGAGAAGATGCTGTTGTTCGCATTTGGGATTCTGAGACAGGTAAACTTTTAAAAGAATCAGACAAGGAGACGGGCCATAAGAAAACAATAACTTCCCTTACAAAATCCTCTGATGGTTCGCATTTTCTAACTGGTTCTTTGGACAAGTCTGCAAGGCTGTGGGATACTAGAACGTTAACACTTATCAAGACCTATGTGACAGAACGCCCAGTCAATGCTGTTACAATGTCTCCACTTCTTGATCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCAGTGACAACAACCGATCATCGTGCAGGGAAGTTTGAAGCTAAATTCTATGATAAGGTACTTCAAGAAGAGATCGGAGGTGTGAAAGGGCATTTTGGACCCATTAATGCTCTGGCTTTCAATCCTGATGGGAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTTGACCCTGATTACTTCAACATCAAGATTTAA 981 45.77 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDLNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMEFPSAIHVKRIARNPSEQTGESVLLLTGPQGRINRAVWGPLNKTIISAGEDAVVRIWDSETGKLLKESDKETGHKKTITSLTKSSDGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKVLQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7159657 7165250 - CmaCh11G012010.1 Cma11g01201 303710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01201 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515
Cma11g01201 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743|GO:0005737|GO:0005852
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cma11g01201 326 Gene3D - 1 326 IPR015943 GO:0005515
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Cma11g01201 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cma11g01201 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Cma11g01201 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Cma11g01201 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Cma11g01201 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Cma11g01201 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cma11g01201 326 SMART WD40_4 1 38 IPR001680 GO:0005515
Cma11g01201 326 SMART WD40_4 177 219 IPR001680 GO:0005515
Cma11g01201 326 SMART WD40_4 222 261 IPR001680 GO:0005515
Cma11g01201 326 SMART WD40_4 135 174 IPR001680 GO:0005515
Cma11g01201 326 SMART WD40_4 41 80 IPR001680 GO:0005515
Cma11g01201 326 SMART WD40_4 277 316 IPR001680 GO:0005515
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Cma11g01201 326 CDD WD40 7 314 - -
Cma11g01201 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Cma11g01201 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Cma11g01201 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Cma11g01201 326 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Cma11g01201 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01201 Cma-Chr11:7159657 Cma14g00572 Cma-Chr14:2859761 0 dispersed
Cma11g01201 Cma-Chr11:7159657 Cma10g00583 Cma-Chr10:2662330 3.48E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01201 K03246 - csv:101211648 652.899