Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01223 ATGGCTGGTAGTAGTGATTTGTTGCCACTCTTGGCTATGGTGGTTGTCCAATTCCTGTATGCAGGCTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCAATGGTTCTAGTTGCTTACAGGCAGATGTTTGGTACCATAGCCATAGCTCCTTGTGCTTATTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTGTGTTCCTTAACTGGGGCAACAGGAAATCAAGTGTTTTACTATGTTGGGTTAAAATATTCATCCCCCACCATCGCATGTGCATTGACCAATGTCCTGCCTGCTGCCACTTTTCTCCTCGCTCTTCTTTTCAGACAAGAATCTGTGGGTATCAAGACAACCCCAGGTGCAGCCAAGGTGATCGGGACTGTTGTGTGCGTCGGAGGGGCAATGTTGCTGTCGTTCTACCATGGACAAACCATCAACCTGGGTGAATCTGGGATTCATTGGAAGTATGCCGAGATGATGAGGGGGGGAAGTTCCAGCAGCCAAGGTGGCAGCGCCATCTGGGGCTCTCTCTACTTGATCATAAGCTCTGTTGCTTGGGCAGCTTGGTTTGTAATCCAAGCAAGGGTTAACTCTCAGTTTCCAGCTCCCTACACGAGCACGGCTATCATGACTTTCATGGCAACCATTCAATGCGGAGCAATCGCCGTTGGCATTGAGCACAGCACAGCTGCAGCTTGGTCATTGAAAAGTCCAATCCGCCTTGTTGGTGCTCTCTATGCGGGAGTGGCGTGCTCAGGGGTTGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAACCCCTTATTGCTCATTATCGTGGCTATTTTCAGCTGGACCTTCTTTCAAGAAAAGTTATACGTAGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAAGAGGTGAAACTACAACAGGTTATTGAAATGGCGGCAGTAGCAGAGGCAAAGCTGGATGAGTGTAATACCAAAGATGACTTGGAAGAACAGTCGTATGCGGTTTCAAATGGAAATATTCTCCATAAGTAA 1119 46.74 MAGSSDLLPLLAMVVVQFLYAGLNITSKLAMEFGMNPMVLVAYRQMFGTIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATGNQVFYYVGLKYSSPTIACALTNVLPAATFLLALLFRQESVGIKTTPGAAKVIGTVVCVGGAMLLSFYHGQTINLGESGIHWKYAEMMRGGSSSSQGGSAIWGSLYLIISSVAWAAWFVIQARVNSQFPAPYTSTAIMTFMATIQCGAIAVGIEHSTAAAWSLKSPIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFNPLLLIIVAIFSWTFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQVIEMAAVAEAKLDECNTKDDLEEQSYAVSNGNILHK 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7830149 7831943 - CmaCh11G012230.1 Cma11g01223 303732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01223 372 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020|GO:0016021
Cma11g01223 372 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Cma11g01223 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 329 - -
Cma11g01223 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Cma11g01223 372 PANTHER WAT1-RELATED PROTEIN 5 334 - -
Cma11g01223 372 PANTHER WAT1-RELATED PROTEIN 5 334 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00954 Cma-Chr2:5676174 Cma11g01223 Cma-Chr11:7830149 3.11E-70 dispersed
Cma11g01223 Cma-Chr11:7830149 Cma18g00826 Cma-Chr18:7215575 1.15E-84 dispersed
Cma11g01223 Cma-Chr11:7830149 Cma11g01226 Cma-Chr11:7876255 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01223 - - csv:101215353 635.95