Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01226 ATGGCTGGTAGTAGTGATTTGTTGCCAATCTTGGCTATGGTGGTTGTCCAATTCCTGTATGCAGGCTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCAATGGTTCTAGTTGCTTACAGGCAGATGTTTGGTACCATAGCCATAGCTCCTTGTGCTTATTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTGTGTTCCTTAACTGGGGCAACAGGAAATCAAGTGTTTTACTATGTTGGGTTAAAATATTCATCCCCCACCATCGCATGTGCATTGACCAATGTCCTGCCTGCTGCCACTTTTCTCCTCGCTCTTCTTTTCAGACAAGAATCTGTGGGTATCAAGACAACCCCAGGTGCAGCCAAGGTGATCGGGACTGTTGTGTGCGTCGGAGGGGCAATGTTGCTGTCGTTCTACCATGGACAAACCATCAACCTGGGTGAATCTGGGATTCATTGGAAGTATGCCGAGATGATGAGGGGGGGAAGTTCCAGCAGCCAAGGTGGCAGCGCCATCTGGGGCTCTCTCTACTTGATCATAAGCTCTGTTGCTTGGGCGGCTTGGTTTGTAATCCAAGCAAGGGTTAACTCTCAGTTTCCAGCTCCCTACACGAGCACGGCTATCATGACTTTCATGGCAACCATTCAATGCGGAGCAATCGCCGTTGGCATTGAGCACAGCACAGCTGCGGCTTGGTCATTGAAAAGTCCAATCCGCCTTGTTGGTGCTCTCTATGCGGGAGTGGCGTGCTCAGGGGTTGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCCCTCTATGCCTCAGTTTTCAACCCCTTATTGCTCATTATCGTGGCTATTTTCAGCTGGACCTTCTTTCAAGAAAAGTTATACGTAGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAAGAGGTGAAACTACAACAGGTTATTGAAATGGCGGCAGTAGCAGAGGCAAAGCTGGATGAGTGTAATACCAAAGATGACTTGGAAGAACAGTCGTATGCGGTTTCAAATGGAAATATTCTCCATAAGTAA 1119 46.92 MAGSSDLLPILAMVVVQFLYAGLNITSKLAMEFGMNPMVLVAYRQMFGTIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATGNQVFYYVGLKYSSPTIACALTNVLPAATFLLALLFRQESVGIKTTPGAAKVIGTVVCVGGAMLLSFYHGQTINLGESGIHWKYAEMMRGGSSSSQGGSAIWGSLYLIISSVAWAAWFVIQARVNSQFPAPYTSTAIMTFMATIQCGAIAVGIEHSTAAAWSLKSPIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFNPLLLIIVAIFSWTFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQVIEMAAVAEAKLDECNTKDDLEEQSYAVSNGNILHK 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7876255 7878279 + CmaCh11G012260.1 Cma11g01226 303735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01226 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 329 - -
Cma11g01226 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Cma11g01226 372 Pfam EamA-like transporter family 8 150 IPR000620 GO:0016020|GO:0016021
Cma11g01226 372 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Cma11g01226 372 PANTHER WAT1-RELATED PROTEIN 5 334 - -
Cma11g01226 372 PANTHER WAT1-RELATED PROTEIN 5 334 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01062 Cma-Chr5:8438982 Cma11g01226 Cma-Chr11:7876255 4.15E-154 dispersed
Cma11g01226 Cma-Chr11:7876255 Cma18g00826 Cma-Chr18:7215575 1.35E-84 dispersed
Cma11g01223 Cma-Chr11:7830149 Cma11g01226 Cma-Chr11:7876255 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01226 - - csv:101215353 635.95