Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01235 ATGGTTAGCGAAGAAGAAGCTCTAATCCAAAAGGTGGTGGATTTGTATGAGCAAATCTCTGGCCTTGAAAGCCTCAAACCTTGTAAGCATGTCGACACTCTGTTCACAGAGTTGGTGGTCACGTGCATGCCACCCACCAGCCCTAATTTCCACATCAATTCACTCTCAAACCCTCTTCAACAAATGAGATCAAATCTGATCCGCCTTTGCGGCCAAGCTGAGTCCCTTTTGGAGTCCCATTTCTCTGATCTCTTAGCCAATTTTGATTACCCTCTTCACCATCTCCATCTCTTCCCTTACTTCTCCAATTATCTCAAGCTTAGCCTCCTTGAATTCTCCATCCTCCGCCGCCACTGCCCCATCCTCCCCTCCTCCGTTGCCTTCGTCGGCTCCGGCCCTCTTCCTCTCACCTCCATCGTCCTCGCCACCCGCCACCTCCCCTCCACCTCCTTCCACAATTATGATCTCGACCCACTTGCTAATTCCCAGGCGTCAAAATTGGTATCGGTGGACTCGGACCTGAAGACGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACGGAGGAGTTGAAGGAGTACGAGGTTGTGTTTTTGGCAGCTCTAGTAGGAATGGAGAAGGAGGAGAAATTGAGAGTGATAGAGCATTTGTGTGAGTTCATGGCGGAAGGGGCTTGTTTGATGGTGAGAAGTGCTCATGGAGGAAGGGCTTTCCTTTATCCTGTGGTGGAGGAATGTGATTTGGTAGGGTTTGAGGTTCTATCGGTGTTTCATCCGAGTGATGAAGTTATAAACTCAGTGATAATTGCAAGAAAAAAGAAGAAGGATGATGATTGTTTGAAGATTGTTGGTGATGATAATCATGAAAATGGTATTGAAAATGGTGTTGTTGTTCATAACAAACAATGTTGTGATCACATTCATGGCTTCAACAATCATGGAGGAATGATTGAGGAGTTAGCTGAGTAG 972 46.71 MVSEEEALIQKVVDLYEQISGLESLKPCKHVDTLFTELVVTCMPPTSPNFHINSLSNPLQQMRSNLIRLCGQAESLLESHFSDLLANFDYPLHHLHLFPYFSNYLKLSLLEFSILRRHCPILPSSVAFVGSGPLPLTSIVLATRHLPSTSFHNYDLDPLANSQASKLVSVDSDLKTRMVFHTCDIMKVTEELKEYEVVFLAALVGMEKEEKLRVIEHLCEFMAEGACLMVRSAHGGRAFLYPVVEECDLVGFEVLSVFHPSDEVINSVIIARKKKKDDDCLKIVGDDNHENGIENGVVVHNKQCCDHIHGFNNHGGMIEELAE 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8123732 8125093 + CmaCh11G012350.1 Cma11g01235 303744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01235 323 Pfam Nicotianamine synthase protein 4 276 IPR004298 GO:0030410|GO:0030418
Cma11g01235 323 PANTHER NICOTIANAMINE SYNTHASE 3 3 308 IPR004298 GO:0030410|GO:0030418
Cma11g01235 323 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 278 IPR004298 GO:0030410|GO:0030418
Cma11g01235 323 Gene3D Vaccinia Virus protein VP39 7 275 IPR029063 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01074 Cma11g01235 CCT
Cma11g01235 Cma12g01028 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00403 Cma-Chr10:1871401 Cma11g01235 Cma-Chr11:8123732 9.22E-101 dispersed
Cma11g01235 Cma-Chr11:8123732 Cma12g01028 Cma-Chr12:8172889 1.08E-111 dispersed
Cma11g01235 Cma-Chr11:8123732 Cma05g01074 Cma-Chr5:8505799 3.51E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01235 K05953 - csv:101218907 491.115