Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01247 ATGAGTCAGACAGAAGTATCAAGGATTAAACCCCCTCTCGTTCCGCTTGCTACCTTGATTGGTCGCGAGCTGAGGAACGAGAGGGTTGAGAAACCTTTTGTGAAGTACGGACAGGCTGCTTTGGCAAAGAAGGGAGAGGACTACTTTCTGATTAAACTTGATTACCACCGTATTCCTGGAAACCCTTCTACTGCATTTTCTGTTTTTGCGATTTTTGATGGGCATAATGGCATATCAGCCGCTATCTTTGCAAAGGAACATTTACTGGGTAATGTTTTAAGTGCAATTCCTCAAGGGGCCAGTCGAGAAAAATGGCTACAAGCCCTTCCTCGAGCATTAGTTGCTGGTTTTGTCAAAACTGACATAGAGTTTCAGCAAAAAGGGGAAACTTCTGGTACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACAGTGGCGTCCGTGGGAGATTCACGGTGCATATTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACGGTTGATCATAGGCTGGAGGAAAATGAGGAAGAGAGGAAACGTGTAACTGCGAGTGGTGGTGAGGTTGGGAGGCTCAATGTTTTTGGCGGCAATGAGGTCGGTCCTCTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTCGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCGATACCACATGTTAAGCAAGTGAAGCTTTCTAATGCTGGCGGACGACTAATAATTGCTTCTGATGGTATATGGGATGCGTTATCCTCTGATATGGCTGCAAAGTCTTGTCGTGGTTTACCTGCAGAGCTTGCTGCTAAGCTAGTTGTGAAGGAGGCTCTGCGGTCGAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATCATACCATCCGAGCAACCTATATTATTACCACCAACTCCAAGGACGAAGCAAAATGTGCTCACCACACTCTTTGGGAAGAAATATCAAAACTCTTTGGGCAAATCTGCAAATAAACTTTCTGCTGTTGGAGTGGTGGAGGAATTGTTTGAAGAAGGTTCCGCTATGCTTGCTGAAAGGTTAGGCAAAGATTTAGCGTCAGATCCAAACTCAGGGATCTTCAAATGTGCAGTTTGTCAAGTGGATCAACCCCCAAATGAAAATTTGCCAATGAATTCGGCGCCTTTCTTTTCGCCATCGTCAAAGCCATGGGAAGGTCCTTTCCTCTGTGCAACATGTCGAAGAAAGAAAGACGCCATGGAAGGAAAAAGGGCAACAAAACCTACAATAACGGTCTAG 1287 45.38 MSQTEVSRIKPPLVPLATLIGRELRNERVEKPFVKYGQAALAKKGEDYFLIKLDYHRIPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGASREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERKRVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILLPPTPRTKQNVLTTLFGKKYQNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDLASDPNSGIFKCAVCQVDQPPNENLPMNSAPFFSPSSKPWEGPFLCATCRRKKDAMEGKRATKPTITV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8283532 8286445 + CmaCh11G012470.1 Cma11g01247 303756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01247 428 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Cma11g01247 428 CDD PP2Cc 43 297 IPR001932 -
Cma11g01247 428 Gene3D - 38 302 IPR036457 -
Cma11g01247 428 Pfam Protein phosphatase 2C 63 280 IPR001932 -
Cma11g01247 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 427 - -
Cma11g01247 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 427 - -
Cma11g01247 428 SMART PP2C_SIG_2 33 297 IPR001932 -
Cma11g01247 428 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Cma11g01247 428 SMART PP2C_4 23 295 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01495 Cma-Chr4:7596201 Cma11g01247 Cma-Chr11:8283532 0 dispersed
Cma10g01145 Cma-Chr10:8101019 Cma11g01247 Cma-Chr11:8283532 0 dispersed
Cma11g01247 Cma-Chr11:8283532 Cma15g00017 Cma-Chr15:115908 3.66E-27 dispersed
Cma11g01247 Cma-Chr11:8283532 Cma18g01003 Cma-Chr18:8424972 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01247 - - csv:101219622 806.208