Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01248 | ATGGCTTCTTTTGTCAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAGGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAAATATAGAGCATGGCAGAAACCTCTTGAAAGGATTATGTTTAAGTATGTTGAGCTTTGTGTGGACATGAGGAAAGGAAGATTTGCAAAGGATGGTTTGATTCAGTACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAATCAAGCTCAAGCATTAGAAGAAGCTCTTGATGTTGATGACTTGGAAGCCGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGGGAGAAAGGAAAGGATAGATCTGATCGCGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAAGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGCTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAACCTCAACAAGTATAGAGACCAAAGAGATCGGCCTGACCTATCTGCTCCAGAGAGCTTGCAGTTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACGGAGCTTGAACTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCCAAGGCATCGTTGATGGTGGTTTACTACGCCAAATTAACAGAGATCTTCTGGATATCGGATAGTAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATCTACAGCTGATAGCATCATCTGTTGTGTTAGCAGCTCTTGCAGTGCCCCCCTATGACTCCAAGCATGGTGCATCACATTTAGAACTGGAACATGAGAAAGAGCGCAGTTTGAGGATGGCTAATCTCATAGGGTTCAGTTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGAAAATCTTCTCTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGTGCGACTCAGGAAATTAAAGATCTTTATCATCTTTTGGAGCATGAGTTCTTCCCTCTCGATCTTGCATTAAAATTGCAACTGTTGTTCACAAAAATATCTAAGCTTGGAGGTAAGCTTTCATCAGCCTCATCTGTACCCGAATTGCAATTGTCTCAATATGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTACTTCAGCAGGTCTCCCATGTATACCAGACTATGAAAATTGAGAGTCTGTCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATTAGTTGACGCAGTTAAACAGAATTTCATTGCCATGAAAGTCGATCATTCAAGGAACATTGTCTTATTTGGCAACTTGGGTATTGAATCAGAAGGGCTTCGGGACCACCTGACTGTGCTTGCTGAGTCCCTAAACAAAGTAAGAGCCATGATCTACCCTCCTGTAAAGAAAACATCAAAAACAGGTGAAATATTGCCTGATTTAGCAGATATTGTTGATAAAGAGCACAAGAGGCTTCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTAAAGATAACTGAAGAGGCTGAGCAGAAGCGTCTTGCTGCAGAATATGAACAAAGGAAAAGTCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCATTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTTGATTCCGAAAAGTTGACTAAACAAACCTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGACAGGAAATGGAAAAGAAATTGCAGAAGCTTTCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCAGCAACGTTAATCGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGAAAATTTTCCAAGAAAGAGTTATCAGTCTTCGCCAAGAGGAGTTTAACAAACGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAATAATTCAGTCTCGTAAAGCAGAAAGGGTGGCTAAGAGAAAGAAAATCTTTTATGTGAGGCGTGAAGAGGAGAGGATCAGAATATTGCGTGAAGAGGAGGAAGCACGCAGGCGTGAAGAAGCCGAAAGGAGGAAAAGGGAGGAAGCTGAACGCAAGGCAAAATTGGACGAGATTGCTGAGAAGCAGAGGCAGAGAGAGCGCGAATTGGAAGAAAAAGAAAGACAGCGGAAAGAAATGCTCTTTGGTGGAGGCAAGTCAGGCGATGCTTCTGCTAGGCCTGATGTTTCTCCTGCTTCTCGACCTCAGGAGTCTAGGACTGCTTCTCCTGCTGCTGCAGCTGCTGCGTCTGCAGCCCCGACTGCAGGAAAATATGTGCCGCCAAGGTTCCTACGTGAACGGACAGAGAGCTCCAGCCCTAATGCACCACCTCCTGAATCTGATCGATGGGGAAGCAGCAGGCCTGACAATCGACCATCTCAGCCAGGTAGCTGGCGCAATGATGATCGTAGACCTGCTGCATTTGGAAGTTCAAGGTCGTCGTGGTCCTCGTCTCGAGTTCCTGCTCGTGGTGGCTCGGAGCGCTGA | 2844 | 43.5 | MASFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARNQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKASLMVVYYAKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVPPYDSKHGASHLELEHEKERSLRMANLIGFSLDSKLESRDVLSRENLLSELVSKGVLSCATQEIKDLYHLLEHEFFPLDLALKLQLLFTKISKLGGKLSSASSVPELQLSQYVPALEKLATLRLLQQVSHVYQTMKIESLSQMIPFFDFSAVEKILVDAVKQNFIAMKVDHSRNIVLFGNLGIESEGLRDHLTVLAESLNKVRAMIYPPVKKTSKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKSQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLSKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQKIFQERVISLRQEEFNKRRAEREEQIRQIIQSRKAERVAKRKKIFYVRREEERIRILREEEEARRREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERQRKEMLFGGGKSGDASARPDVSPASRPQESRTASPAAAAAASAAPTAGKYVPPRFLRERTESSSPNAPPPESDRWGSSRPDNRPSQPGSWRNDDRRPAAFGSSRSSWSSSRVPARGGSER | 947 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8299443 | 8308013 | - | CmaCh11G012480.1 | Cma11g01248 | 303757 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01248 | 947 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 727 | 889 | IPR027512 | GO:0005852 | |
Cma11g01248 | 947 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 727 | 889 | - | - | |
Cma11g01248 | 947 | Pfam | PCI domain | 373 | 509 | IPR000717 | - | |
Cma11g01248 | 947 | Coils | Coil | 669 | 699 | - | - | |
Cma11g01248 | 947 | Coils | Coil | 772 | 831 | - | - | |
Cma11g01248 | 947 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
Cma11g01248 | 947 | MobiDBLite | consensus disorder prediction | 926 | 947 | - | - | |
Cma11g01248 | 947 | SMART | PINT_4 | 441 | 532 | IPR000717 | - | |
Cma11g01248 | 947 | Coils | Coil | 561 | 600 | - | - | |
Cma11g01248 | 947 | Gene3D | - | 268 | 343 | - | - | |
Cma11g01248 | 947 | Gene3D | - | 363 | 494 | - | - | |
Cma11g01248 | 947 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 934 | IPR027512 | GO:0005852 | |
Cma11g01248 | 947 | Coils | Coil | 610 | 649 | - | - | |
Cma11g01248 | 947 | MobiDBLite | consensus disorder prediction | 787 | 947 | - | - | |
Cma11g01248 | 947 | MobiDBLite | consensus disorder prediction | 787 | 834 | - | - | |
Cma11g01248 | 947 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 725 | - | - | |
Cma11g01248 | 947 | Coils | Coil | 93 | 120 | - | - | |
Cma11g01248 | 947 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | - | - | |
Cma11g01248 | 947 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 725 | IPR027512 | GO:0005852 | |
Cma11g01248 | 947 | Gene3D | UVR domain | 217 | 267 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g01147 | Cma-Chr10:8114322 | Cma11g01248 | Cma-Chr11:8299443 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01248 | K03254 | - | csv:101209344 | 1463.36 |