Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01248 ATGGCTTCTTTTGTCAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAGGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAAATATAGAGCATGGCAGAAACCTCTTGAAAGGATTATGTTTAAGTATGTTGAGCTTTGTGTGGACATGAGGAAAGGAAGATTTGCAAAGGATGGTTTGATTCAGTACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAATCAAGCTCAAGCATTAGAAGAAGCTCTTGATGTTGATGACTTGGAAGCCGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGGGAGAAAGGAAAGGATAGATCTGATCGCGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAAGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGCTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAACCTCAACAAGTATAGAGACCAAAGAGATCGGCCTGACCTATCTGCTCCAGAGAGCTTGCAGTTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACGGAGCTTGAACTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCCAAGGCATCGTTGATGGTGGTTTACTACGCCAAATTAACAGAGATCTTCTGGATATCGGATAGTAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATCTACAGCTGATAGCATCATCTGTTGTGTTAGCAGCTCTTGCAGTGCCCCCCTATGACTCCAAGCATGGTGCATCACATTTAGAACTGGAACATGAGAAAGAGCGCAGTTTGAGGATGGCTAATCTCATAGGGTTCAGTTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGAAAATCTTCTCTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGTGCGACTCAGGAAATTAAAGATCTTTATCATCTTTTGGAGCATGAGTTCTTCCCTCTCGATCTTGCATTAAAATTGCAACTGTTGTTCACAAAAATATCTAAGCTTGGAGGTAAGCTTTCATCAGCCTCATCTGTACCCGAATTGCAATTGTCTCAATATGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTACTTCAGCAGGTCTCCCATGTATACCAGACTATGAAAATTGAGAGTCTGTCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATTAGTTGACGCAGTTAAACAGAATTTCATTGCCATGAAAGTCGATCATTCAAGGAACATTGTCTTATTTGGCAACTTGGGTATTGAATCAGAAGGGCTTCGGGACCACCTGACTGTGCTTGCTGAGTCCCTAAACAAAGTAAGAGCCATGATCTACCCTCCTGTAAAGAAAACATCAAAAACAGGTGAAATATTGCCTGATTTAGCAGATATTGTTGATAAAGAGCACAAGAGGCTTCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTAAAGATAACTGAAGAGGCTGAGCAGAAGCGTCTTGCTGCAGAATATGAACAAAGGAAAAGTCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCATTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTTGATTCCGAAAAGTTGACTAAACAAACCTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGACAGGAAATGGAAAAGAAATTGCAGAAGCTTTCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCAGCAACGTTAATCGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGAAAATTTTCCAAGAAAGAGTTATCAGTCTTCGCCAAGAGGAGTTTAACAAACGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAATAATTCAGTCTCGTAAAGCAGAAAGGGTGGCTAAGAGAAAGAAAATCTTTTATGTGAGGCGTGAAGAGGAGAGGATCAGAATATTGCGTGAAGAGGAGGAAGCACGCAGGCGTGAAGAAGCCGAAAGGAGGAAAAGGGAGGAAGCTGAACGCAAGGCAAAATTGGACGAGATTGCTGAGAAGCAGAGGCAGAGAGAGCGCGAATTGGAAGAAAAAGAAAGACAGCGGAAAGAAATGCTCTTTGGTGGAGGCAAGTCAGGCGATGCTTCTGCTAGGCCTGATGTTTCTCCTGCTTCTCGACCTCAGGAGTCTAGGACTGCTTCTCCTGCTGCTGCAGCTGCTGCGTCTGCAGCCCCGACTGCAGGAAAATATGTGCCGCCAAGGTTCCTACGTGAACGGACAGAGAGCTCCAGCCCTAATGCACCACCTCCTGAATCTGATCGATGGGGAAGCAGCAGGCCTGACAATCGACCATCTCAGCCAGGTAGCTGGCGCAATGATGATCGTAGACCTGCTGCATTTGGAAGTTCAAGGTCGTCGTGGTCCTCGTCTCGAGTTCCTGCTCGTGGTGGCTCGGAGCGCTGA 2844 43.5 MASFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARNQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKASLMVVYYAKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVPPYDSKHGASHLELEHEKERSLRMANLIGFSLDSKLESRDVLSRENLLSELVSKGVLSCATQEIKDLYHLLEHEFFPLDLALKLQLLFTKISKLGGKLSSASSVPELQLSQYVPALEKLATLRLLQQVSHVYQTMKIESLSQMIPFFDFSAVEKILVDAVKQNFIAMKVDHSRNIVLFGNLGIESEGLRDHLTVLAESLNKVRAMIYPPVKKTSKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKSQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLSKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQKIFQERVISLRQEEFNKRRAEREEQIRQIIQSRKAERVAKRKKIFYVRREEERIRILREEEEARRREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERQRKEMLFGGGKSGDASARPDVSPASRPQESRTASPAAAAAASAAPTAGKYVPPRFLRERTESSSPNAPPPESDRWGSSRPDNRPSQPGSWRNDDRRPAAFGSSRSSWSSSRVPARGGSER 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8299443 8308013 - CmaCh11G012480.1 Cma11g01248 303757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01248 947 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 727 889 IPR027512 GO:0005852
Cma11g01248 947 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 727 889 - -
Cma11g01248 947 Pfam PCI domain 373 509 IPR000717 -
Cma11g01248 947 Coils Coil 669 699 - -
Cma11g01248 947 Coils Coil 772 831 - -
Cma11g01248 947 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cma11g01248 947 MobiDBLite consensus disorder prediction 926 947 - -
Cma11g01248 947 SMART PINT_4 441 532 IPR000717 -
Cma11g01248 947 Coils Coil 561 600 - -
Cma11g01248 947 Gene3D - 268 343 - -
Cma11g01248 947 Gene3D - 363 494 - -
Cma11g01248 947 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 934 IPR027512 GO:0005852
Cma11g01248 947 Coils Coil 610 649 - -
Cma11g01248 947 MobiDBLite consensus disorder prediction 787 947 - -
Cma11g01248 947 MobiDBLite consensus disorder prediction 787 834 - -
Cma11g01248 947 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 725 - -
Cma11g01248 947 Coils Coil 93 120 - -
Cma11g01248 947 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cma11g01248 947 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 725 IPR027512 GO:0005852
Cma11g01248 947 Gene3D UVR domain 217 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01147 Cma-Chr10:8114322 Cma11g01248 Cma-Chr11:8299443 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01248 K03254 - csv:101209344 1463.36