Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01251 ATGTCATGCGTGAGAGTTATGTTGTTGAGATGGAAAGTCCGGAGGCCTAGATTCTGCTATAAAGGAAGTGGAGATATTTTGAATTTGGAACCGATTTTTTCAAAAGAATTGTTTTCTGGACAAACCGATTCTTCCATCGAAGAGGCTGATAAAATGACACCCGTTTGGAGCTATGTTATGTCCAAGTGGCAAACGTTGTCCACTTCTGATCATGCCTCTGTGGTTTCCATTAACTTATTTGTAGCTCTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCGATCACTGCCCTCTTCATTGGTATGTTTACCGGAGTCATCATTTTACTGGTTAGTGGTGGGAAAAGTTCGCATTTATTGCTCTTCAGCGAAGACATATTCTTCATTTATCTTCTGCCACCTATCATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTCATTACAATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTCAATCATCTCATTAGGAGCTTTTCAGATCTTTCAGAGAATGGATGTTGGATCACTGGATATTGCCGATATTTTAGCAATTGGAGCTATATTTGCAGCTACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACACCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATTCAAAGCTTAGACCTCAGTAAAGTTGATGCAAGAGTTGCTTTGCATTTTATCGGGAGCTTCTTTTATTTGTTTTCAACGAGCACTCTACTCGGAGTGTTTGTTGGGCTGCTGAGTGCTTATACAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTAATGATGCTCATGGCATACCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACACTATACATGGCATAATGTGACTGAGAGTTCAAGAGTTACCACTAAGCATGCTTTTGCTACCTTATCCTTCATTTCAGAGACGTTTATCTTCGTTTATGTTGGCATGGATGCCTTGGACATTGAGAAGTGGAGCTATGTTAGTGATAGTCCAGGGACATCTGTTGCTGTGAGTGCAATATTACTAGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGTTAAAAAATCGGCTTCCGAGAAAATTACCTTCAGGCAACAAGTTATAATTTGGTGGGCTGGTCTCATGAGAGGGGCTTTCACTAGAGCTGGCCACACTCAACTGCGGGGGAATGCAATTATGATAACTAGTACCGTAACTGTTGTCCTTTTTAGCACGATGGTGTTTGGGATATTGACCAAGCCTCTTATAAAATGTTTGATACCTCACCCCAAAGACACCACCAGCTCCAGCATACTATCGGAACCAGCGGCTCCAAAATCATTCTCGGCACCGCTACTCGGAAGTGCACAGGATTCGGAGGTGGATCTTGATAGTCCCAATATTCCTCGTCCAAGCAGTATCCGTGCACTCCTTGCGACTCCTACGCATACTGTTCATCGCTACTGGCGAAAATTTGATGATGCCTTCATGCGTCCAATGTTCGGGGGCCGGGGTTTTGTGCCCTTTGTTCCAGGATCGCCAACAGAAAGGAGTAGGCACTGA 1746 42.15 MSCVRVMLLRWKVRRPRFCYKGSGDILNLEPIFSKELFSGQTDSSIEEADKMTPVWSYVMSKWQTLSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALFIGMFTGVIILLVSGGKSSHLLLFSEDIFFIYLLPPIIFNAGFQVKKKQFFVNFITIMLFGAIGTLVSCSIISLGAFQIFQRMDVGSLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYTIKKLYFGRHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSYVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFLSNLVKKSASEKITFRQQVIIWWAGLMRGAFTRAGHTQLRGNAIMITSTVTVVLFSTMVFGILTKPLIKCLIPHPKDTTSSSILSEPAAPKSFSAPLLGSAQDSEVDLDSPNIPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERSRH 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8327881 8333693 + CmaCh11G012510.1 Cma11g01251 303760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01251 581 Pfam Sodium/hydrogen exchanger family 80 485 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma11g01251 581 PANTHER SODIUM/HYDROGEN EXCHANGER 58 581 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cma11g01251 581 PANTHER SODIUM/HYDROGEN EXCHANGER 2 58 581 - -
Cma11g01251 581 PRINTS Na+/H+ exchanger signature 164 172 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma11g01251 581 PRINTS Na+/H+ exchanger signature 204 214 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma11g01251 581 PRINTS Na+/H+ exchanger signature 149 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma11g01251 581 PRINTS Na+/H+ exchanger signature 135 146 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma11g01251 581 Gene3D - 196 248 - -
Cma11g01251 581 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 75 496 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01092 Cma-Chr10:7256436 Cma11g01251 Cma-Chr11:8327881 0 dispersed
Cma11g01251 Cma-Chr11:8327881 Cma17g01131 Cma-Chr17:7885629 0 dispersed
Cma11g01251 Cma-Chr11:8327881 Cma08g01201 Cma-Chr8:7385483 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01251 - - csv:101214934 917.531