Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01252 ATGCAAATCAAGGAGGAGGAGCAGAAGGCTGATGGTGGTCAGGATCGGCCACGAGCAGAGCGGCGAAGGTCAAGGAAGGTTCCAAGGCCTGTTAACTTGCCAAACCATTCCCAGGGAGCGCAAGTTGCTGCTGGATGGCCATCTTGGCTCACGGCAGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCAAGGAAGGCTGATACGTTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAGGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCGGAAAGTGTGAAATTTATGGCTAGAGAGATTCTAATCCTTCGGAGATTAAATCATAATAACGTTGTGAAATTGGAGGGGTTGGTCACATCGCGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCTGGTCTTGCTGCAAATCCATCAATCAAGTTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCACAATCGTCATGTGCTTCACCGTGATATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAGATTGCTGATTTTGGATTGGCTTCTTTCTTTGATCCTAATCACAAGCACCCAATGACTAGTCGAGTTGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAGCTTCCAAATGCAACATTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATATAAAGATTTCCCGCTATCTTCCCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGTTGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAGCCTTTAGCTTGCAAACCCTCTAGCCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCCCGGAGACTAAGAGCAGCTAACAAAGCCCAGGGAGATGGAGTGAAGAAAACACGCACACGTGTTAGGGCAATTCCAGCTCCTGAAGCAAATGCAGAAATACAAACAAATATCGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGCGAAAAGTTCCCCCCACCACACCAGGACGGAGCGCTTGGCTTTACGCTAGGATATTCACGGCATATGGATCCATCTGGTGTTCCTCCCGACATACCATTCAGCTCGACGCTGTTCACTTACTCTAAGGAGCCAGTCCAAGTCTGGTCTGGTCCACTGGTCCCCGGTGCTGGCACTGATGCTCCACCTAGGCAGAAGAAGCATGTGGGAGGAGTGACATCAAATTCTTCCCACTGTTCATCCAAAGACATTGACAATCAATCAGCCGGGCCTGCTCTAAGCTGA 1587 45.56 MQIKEEEQKADGGQDRPRAERRRSRKVPRPVNLPNHSQGAQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRHVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETYKDFPLSSLPLIETLLAIDPVERKTATDALNSEFFMTEPLACKPSSLPKYPPSKEMDARRRDDEARRLRAANKAQGDGVKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHMDPSGVPPDIPFSSTLFTYSKEPVQVWSGPLVPGAGTDAPPRQKKHVGGVTSNSSHCSSKDIDNQSAGPALS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8335758 8348405 - CmaCh11G012520.1 Cma11g01252 303761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01252 528 MobiDBLite consensus disorder prediction 484 528 - -
Cma11g01252 528 Gene3D Transferase(Phosphotransferase) domain 1 152 393 - -
Cma11g01252 528 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01252 528 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01252 528 SUPERFAMILY Protein kinase-like (PK-like) 63 357 IPR011009 -
Cma11g01252 528 CDD STKc_CDK9_like 69 353 - -
Cma11g01252 528 Pfam Protein kinase domain 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01252 528 PANTHER CELL DIVISION PROTEIN KINASE 23 495 - -
Cma11g01252 528 PANTHER OS01G0367700 PROTEIN 23 495 - -
Cma11g01252 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cma11g01252 528 MobiDBLite consensus disorder prediction 503 528 - -
Cma11g01252 528 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cma11g01252 528 Gene3D Phosphorylase Kinase; domain 1 56 151 - -
Cma11g01252 528 MobiDBLite consensus disorder prediction 1 21 - -
Cma11g01252 528 MobiDBLite consensus disorder prediction 363 383 - -
Cma11g01252 528 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01091 Cma-Chr10:7213800 Cma11g01252 Cma-Chr11:8335758 0 dispersed
Cma11g01252 Cma-Chr11:8335758 Cma12g01100 Cma-Chr12:8707865 0 dispersed
Cma11g01252 Cma-Chr11:8335758 Cma06g01464 Cma-Chr6:9351664 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68911 PF00069 Pkinase 3.90E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01252 K08819 - csv:101215893 976.467