Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01252 | ATGCAAATCAAGGAGGAGGAGCAGAAGGCTGATGGTGGTCAGGATCGGCCACGAGCAGAGCGGCGAAGGTCAAGGAAGGTTCCAAGGCCTGTTAACTTGCCAAACCATTCCCAGGGAGCGCAAGTTGCTGCTGGATGGCCATCTTGGCTCACGGCAGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCAAGGAAGGCTGATACGTTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAGGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCGGAAAGTGTGAAATTTATGGCTAGAGAGATTCTAATCCTTCGGAGATTAAATCATAATAACGTTGTGAAATTGGAGGGGTTGGTCACATCGCGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCTGGTCTTGCTGCAAATCCATCAATCAAGTTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCACAATCGTCATGTGCTTCACCGTGATATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAGATTGCTGATTTTGGATTGGCTTCTTTCTTTGATCCTAATCACAAGCACCCAATGACTAGTCGAGTTGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAGCTTCCAAATGCAACATTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATATAAAGATTTCCCGCTATCTTCCCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGTTGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAGCCTTTAGCTTGCAAACCCTCTAGCCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCCCGGAGACTAAGAGCAGCTAACAAAGCCCAGGGAGATGGAGTGAAGAAAACACGCACACGTGTTAGGGCAATTCCAGCTCCTGAAGCAAATGCAGAAATACAAACAAATATCGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGCGAAAAGTTCCCCCCACCACACCAGGACGGAGCGCTTGGCTTTACGCTAGGATATTCACGGCATATGGATCCATCTGGTGTTCCTCCCGACATACCATTCAGCTCGACGCTGTTCACTTACTCTAAGGAGCCAGTCCAAGTCTGGTCTGGTCCACTGGTCCCCGGTGCTGGCACTGATGCTCCACCTAGGCAGAAGAAGCATGTGGGAGGAGTGACATCAAATTCTTCCCACTGTTCATCCAAAGACATTGACAATCAATCAGCCGGGCCTGCTCTAAGCTGA | 1587 | 45.56 | MQIKEEEQKADGGQDRPRAERRRSRKVPRPVNLPNHSQGAQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRHVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETYKDFPLSSLPLIETLLAIDPVERKTATDALNSEFFMTEPLACKPSSLPKYPPSKEMDARRRDDEARRLRAANKAQGDGVKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHMDPSGVPPDIPFSSTLFTYSKEPVQVWSGPLVPGAGTDAPPRQKKHVGGVTSNSSHCSSKDIDNQSAGPALS | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8335758 | 8348405 | - | CmaCh11G012520.1 | Cma11g01252 | 303761 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01252 | 528 | MobiDBLite | consensus disorder prediction | 484 | 528 | - | - | |
Cma11g01252 | 528 | Gene3D | Transferase(Phosphotransferase) domain 1 | 152 | 393 | - | - | |
Cma11g01252 | 528 | SMART | serkin_6 | 69 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01252 | 528 | ProSiteProfiles | Protein kinase domain profile. | 69 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01252 | 528 | SUPERFAMILY | Protein kinase-like (PK-like) | 63 | 357 | IPR011009 | - | |
Cma11g01252 | 528 | CDD | STKc_CDK9_like | 69 | 353 | - | - | |
Cma11g01252 | 528 | Pfam | Protein kinase domain | 69 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01252 | 528 | PANTHER | CELL DIVISION PROTEIN KINASE | 23 | 495 | - | - | |
Cma11g01252 | 528 | PANTHER | OS01G0367700 PROTEIN | 23 | 495 | - | - | |
Cma11g01252 | 528 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01252 | 528 | MobiDBLite | consensus disorder prediction | 503 | 528 | - | - | |
Cma11g01252 | 528 | ProSitePatterns | Protein kinases ATP-binding region signature. | 75 | 98 | IPR017441 | GO:0005524 | |
Cma11g01252 | 528 | Gene3D | Phosphorylase Kinase; domain 1 | 56 | 151 | - | - | |
Cma11g01252 | 528 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma11g01252 | 528 | MobiDBLite | consensus disorder prediction | 363 | 383 | - | - | |
Cma11g01252 | 528 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g01091 | Cma-Chr10:7213800 | Cma11g01252 | Cma-Chr11:8335758 | 0 | dispersed | |
Cma11g01252 | Cma-Chr11:8335758 | Cma12g01100 | Cma-Chr12:8707865 | 0 | dispersed | |
Cma11g01252 | Cma-Chr11:8335758 | Cma06g01464 | Cma-Chr6:9351664 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68911 | PF00069 | Pkinase | 3.90E-67 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01252 | K08819 | - | csv:101215893 | 976.467 |