Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01284 ATGGTTTCTTCAGGGGACCAAATAGAGACTAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCATTTAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGTGGAACTAATGCATCAAATTCTGATCACAAAAGCACTGCGGCTTCCAGGGAGACACTTGAAGAGGCTGTTAAGCAGCCTGACGTTACAATCCCACTAGTGGATCGAGATATCTCTAATGTAGTGTCTGAGAAAGTGACCCAGAACCCAATTCATGCGGATCAGGACTCGCATCCTGACTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGATATTATTTACTTTGGCCCGCACGATCACCCTAGACCTCAACCTCACATTCCTGTTGCTGTTGGAGTTGTTAACATGGTTGAAGAAAAACTAGATGATCATGCTTCCAGAAGTTCACAAGATAAGACCTCCACTGCACTTGGCCAGACACCTCGTAAAACTGAGCCGGGTGATGCGCTTCAACTGTCAATAGACATGGCCAATGATAAGGAAAAAGATGAAGGTTCGAAAAGGTCTAGGATCAATGATGAGGTGGACAGTGATGATACACGAGACTTGAAACGAGAGAAGAAAATATGTAATATTGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCTCGTGTTGTTGTTCAAACACCCAGTGAGGTTGACATTGTTAACGATGGATACCGCTGGCGGAAGTACGGACAGAAACTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCATCTCATGATCCAAAAGTGGTTCTTACCACGTATGAGGGTCATCATGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACTCAGCTGGGTCCACAGCAGCCCACAGTGATGAGATGAAAACAAAAATGGTCGGTAGTTCTATTGGCCAGGATACGGTGGTTCATGCTAATAAGGATCCTCAAAGCAATTCAAGTTCTGAAGGAAAATTAATTGAAACGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATAGAATTGTCCTCGACATGGTGGTATACCAGGCAAGGAGTTTCGAGTGCTCAAAATAA 1275 43.61 MVSSGDQIETKVDSDRLEHEQSSFSQSQASQEDPGGTNASNSDHKSTAASRETLEEAVKQPDVTIPLVDRDISNVVSEKVTQNPIHADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDIIYFGPHDHPRPQPHIPVAVGVVNMVEEKLDDHASRSSQDKTSTALGQTPRKTEPGDALQLSIDMANDKEKDEGSKRSRINDEVDSDDTRDLKREKKICNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGHHDHDMPPARTVTLNSAGSTAAHSDEMKTKMVGSSIGQDTVVHANKDPQSNSSSEGKLIETNGKSNATEASDRIVLDMVVYQARSFECSK 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8583212 8586172 + CmaCh11G012840.1 Cma11g01284 303793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01284 424 SMART WRKY_cls 281 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 SMART WRKY_cls 108 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 MobiDBLite consensus disorder prediction 1 62 - -
Cma11g01284 424 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 406 - -
Cma11g01284 424 Gene3D WRKY domain 94 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 SUPERFAMILY WRKY DNA-binding domain 103 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 Pfam WRKY DNA -binding domain 282 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 Pfam WRKY DNA -binding domain 109 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 406 IPR044810 GO:0003700
Cma11g01284 424 MobiDBLite consensus disorder prediction 219 245 - -
Cma11g01284 424 ProSiteProfiles WRKY domain profile. 276 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 MobiDBLite consensus disorder prediction 21 47 - -
Cma11g01284 424 ProSiteProfiles WRKY domain profile. 103 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 MobiDBLite consensus disorder prediction 376 400 - -
Cma11g01284 424 SUPERFAMILY WRKY DNA-binding domain 273 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01284 424 MobiDBLite consensus disorder prediction 186 245 - -
Cma11g01284 424 Gene3D WRKY domain 268 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01284 Cma-Chr11:8583212 Cma16g00943 Cma-Chr16:7269003 2.90E-78 dispersed
Cma11g01284 Cma-Chr11:8583212 Cma06g00658 Cma-Chr6:3263898 3.60E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35879 PF03106 WRKY 5.50E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01284 K18834 - csv:101212482 618.616