Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01284 | ATGGTTTCTTCAGGGGACCAAATAGAGACTAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCATTTAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGTGGAACTAATGCATCAAATTCTGATCACAAAAGCACTGCGGCTTCCAGGGAGACACTTGAAGAGGCTGTTAAGCAGCCTGACGTTACAATCCCACTAGTGGATCGAGATATCTCTAATGTAGTGTCTGAGAAAGTGACCCAGAACCCAATTCATGCGGATCAGGACTCGCATCCTGACTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGATATTATTTACTTTGGCCCGCACGATCACCCTAGACCTCAACCTCACATTCCTGTTGCTGTTGGAGTTGTTAACATGGTTGAAGAAAAACTAGATGATCATGCTTCCAGAAGTTCACAAGATAAGACCTCCACTGCACTTGGCCAGACACCTCGTAAAACTGAGCCGGGTGATGCGCTTCAACTGTCAATAGACATGGCCAATGATAAGGAAAAAGATGAAGGTTCGAAAAGGTCTAGGATCAATGATGAGGTGGACAGTGATGATACACGAGACTTGAAACGAGAGAAGAAAATATGTAATATTGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCTCGTGTTGTTGTTCAAACACCCAGTGAGGTTGACATTGTTAACGATGGATACCGCTGGCGGAAGTACGGACAGAAACTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCATCTCATGATCCAAAAGTGGTTCTTACCACGTATGAGGGTCATCATGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACTCAGCTGGGTCCACAGCAGCCCACAGTGATGAGATGAAAACAAAAATGGTCGGTAGTTCTATTGGCCAGGATACGGTGGTTCATGCTAATAAGGATCCTCAAAGCAATTCAAGTTCTGAAGGAAAATTAATTGAAACGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATAGAATTGTCCTCGACATGGTGGTATACCAGGCAAGGAGTTTCGAGTGCTCAAAATAA | 1275 | 43.61 | MVSSGDQIETKVDSDRLEHEQSSFSQSQASQEDPGGTNASNSDHKSTAASRETLEEAVKQPDVTIPLVDRDISNVVSEKVTQNPIHADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDIIYFGPHDHPRPQPHIPVAVGVVNMVEEKLDDHASRSSQDKTSTALGQTPRKTEPGDALQLSIDMANDKEKDEGSKRSRINDEVDSDDTRDLKREKKICNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGHHDHDMPPARTVTLNSAGSTAAHSDEMKTKMVGSSIGQDTVVHANKDPQSNSSSEGKLIETNGKSNATEASDRIVLDMVVYQARSFECSK | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8583212 | 8586172 | + | CmaCh11G012840.1 | Cma11g01284 | 303793 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01284 | 424 | SMART | WRKY_cls | 281 | 340 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | SMART | WRKY_cls | 108 | 166 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Cma11g01284 | 424 | PANTHER | WRKY TRANSCRIPTION FACTOR 1 | 1 | 406 | - | - | |
Cma11g01284 | 424 | Gene3D | WRKY domain | 94 | 168 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | SUPERFAMILY | WRKY DNA-binding domain | 103 | 167 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | Pfam | WRKY DNA -binding domain | 282 | 338 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | Pfam | WRKY DNA -binding domain | 109 | 165 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 1 | 406 | IPR044810 | GO:0003700 | |
Cma11g01284 | 424 | MobiDBLite | consensus disorder prediction | 219 | 245 | - | - | |
Cma11g01284 | 424 | ProSiteProfiles | WRKY domain profile. | 276 | 341 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | MobiDBLite | consensus disorder prediction | 21 | 47 | - | - | |
Cma11g01284 | 424 | ProSiteProfiles | WRKY domain profile. | 103 | 167 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | MobiDBLite | consensus disorder prediction | 376 | 400 | - | - | |
Cma11g01284 | 424 | SUPERFAMILY | WRKY DNA-binding domain | 273 | 341 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01284 | 424 | MobiDBLite | consensus disorder prediction | 186 | 245 | - | - | |
Cma11g01284 | 424 | Gene3D | WRKY domain | 268 | 334 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01284 | Cma-Chr11:8583212 | Cma16g00943 | Cma-Chr16:7269003 | 2.90E-78 | dispersed | |
Cma11g01284 | Cma-Chr11:8583212 | Cma06g00658 | Cma-Chr6:3263898 | 3.60E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35879 | PF03106 | WRKY | 5.50E-26 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01284 | K18834 | - | csv:101212482 | 618.616 |