Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01285 ATGTCTCAAAATTCTAAGTTATCTTGTTCCAATGTTATATTACCTGCCGGGTTTAAGGCGAAGAGGGCTAGGGAGCATTTCCATGGCCAACGGTGTAGTAATCTTCTTTATCCCTTGCCATTTGGCGTCATTTTGATTGTGGGTCTTTGCTATATTTTGAGTCTTTGTGATGGGAATTCTGTTCGGGAAGTGGAGATTCCTGATACGTGTAAAGAGAAGGCTTGGAACATGCTGAAGCATTACAATGTTAGTGAGAGTCAGTTTCATGCTTTGGCTTCGTTCTTCATTCATTCAGATCAGGCAGCATCTCTCCAGTGTGCTGAAGACCCAGGGCCTGATATTGGCCTGAAAGAATGCATTGCTTGCGCTTTGAAGATGCTAGAAGAGGAGCTAAACTTGCAAAAGCAGCGTGGATGGCTTTCTGAAAATTTACAACCTGAAGGCCAGTGCCCAATTAGGGGTGAGATGGATTCCTTCAATAATGATCTATTGCAGTTAGTGGACAAGACACGCTCACTTACTTCACAATCTTCTTTTGCTTTTGTGTCTCCTTGTCATCAGATTCATAGAGAGAAGATCTTGCATTCTAAGGAAATTGGAAACGAGCATTCGCGAAGTTTGAACGGATTAGTAATGGCATGTTTATGGATCCTTGCTGTAGTGATATCATGTCTGAAGATGTCTAGTTTTCATTTGAAACTAAGGAACCATAAGCATAAGCCAATAAAGCATCCCTCGGTCGAGAAGCAGCCAATGATTCAACTGCAGAAAGTGTTGCTACAGAAGAAGCAGTTAGATCTATCTCCAAGTCCTCCTAAGGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTACTTGGAGTTATTGGATCCTTTTGGCTCTTTTGGTATTTAAACAACAAAATCATCCTGAGGAGAGAAGAAACACTTGCGAACATGTGTGATGAGCGAGCTCGAATGTTACAGGATCAATTCAATGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTAGTCTCCACTTTTCACCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACATCTTTTGAGCGACCACTAACCAGTGGCGTGGCGTATGCTTTGAAAGTTAACCATTCAGAAAGAAAGCAATTTGAAGAGGAACACGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACTCTTGTTCAGGATTGTATTCCTGAGAATTTAGATCCTGCTCCCTTTCAGGATGAATATGCCCCTGTCATATTTTCACAAGAAACTGTATCACATATAGTTTCCATCGACATGATGTCGGGAAAGGAAGACCGCGAAAACATCTTACGAGCAAGGGCTTCCGGGAAGGGAGTGCTGACATCACCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTACTCACTTTTGCTGTCTATAACACTGACCTTCCTCCTGATGCAACACCAGAGCAACGTACTGAAGCTACTGTTGGGTATCTCGGAGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCCAGCAAGCAATCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGGTCCCATCAAGATGTATGGTTCTGATGTGGTTGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGATGCCTCAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTTGTTATTACTTTACTCGTTGGACATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAGAATGACTGTCGTGAGATGATGGAACTCAAAACTCGTGCTGAAGCTGCAGATGTGGCGAAGTCTCAGTTTCTTGCTACTGTTTCTCATGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACAGGACTATGCCCAAACTGCATATGATAGTGGGAAAGAATTGATATCACTAATAAATGAGGTTCTTGATCAAGCTAAAATAGAATCAGGCAGGCTTGAACTCGAAGATGTACCGTTCGATCCACGAGCTTTACTGGATAATGTGCTGTCGATGTTCTCTGGAAAATGCCATGAAAAGGGGATAGAGTTAGCTGTTTATGTCTCTAATCTAGTCCCGGAAATCCTCATTGGCGACCCGGGACGGTTTCGGCAGATAATCACCAATCTTGTGGGAAACTCAATTAAGTTCACCAACGACAAAGGACACATATTTGTTACCGTGCACCTAGCCGACGAACTGAAGACTCCGCTTGATGCGATGGACAGCGTGCTAAGACAAGGCTTAGATTTAGTAAAAGAGACGTCGAAAAAATGTTATAATACATTAAGCGGGTTTCCAGTTGTTGAAAGATGCAAGAGTTGGGAGCATTTTGAGATATTTAGTAGAACAGATGCGATGAAGGAAGATGACTTAATTAAATTGCTTGTATCGGTCGAGGATACAGGTCATGGAATTCCTTTAGAAGCACAAAGTCGAATCTTTACGCCTTTTATGCAAGCTGATAGCTCGACTTCGCGTAAGTATGGTGGGACTGGAATAGGGCTGAGCATCAGCAAATGTCTGGTGGAACTAATGGGTGGGGAGATAGGTTTTGTGAGCCATCCTAGTGTTGGCAGCACATTTTCATTTACTGGATCTTTGAGAAAAGGCGATACAAGGTCTCTCGATACAAAGTGGCAGCAGAACGATCCAACTGTATTGGATTTCCGAGGACTGCAAGCGTTGGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTCGGTAGATATAGTTTCGAGTCTGGTTTCAGCGCACGAATACATAAGGAACAATTGCATCAAAAGTCCATCCAAGTCATTGGCCATGGTGCTTATCGACAAAGATGTATGGGATAACCAAACCGGTCCGACAATCGCTCGTGTATTTAAAGAACATGGGGTAAATGGCAAAGAATCAACACGAAGTCCTAAGATCTTTCTCTTGGCTACCTCTGATCTTCAAGAGACGAGAGCTCTTAAGTCGACCGGTTATATTAATAATGTAATGACGAAACCTCTTAGGTTGGGCGTCTTGATTGGATGCTTCCAGGAAGCTTTTGGGAAGGTAAATCGAAAGAAGCCGTCGATTCTCGGGAACTTACTGAGAGAGAAGCAAATACTGGTGGTCGATGACAATGCCGTTAATAGACGAGTTGCAGAAGGCGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTAGAGCTGCTATTTCCTTGTTGAAACCACCACACAAGTTCCATGCCTGCTTCATGGATCTTCAGATGCCTGAGATGGACGGGTTTACAGCAACACGAGAGATACGAAATATCGAAAAGAAGGTTAGCGAGGACATTGCTTCTGGGAAAGCATCAAGTGATATGTTTGGGAATGTGGCTGTTTGGCATACACCAGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGGCCTGCGGGATGGATGGTTATGTCGCAAAGCCTTTTGAAGAAGAAAAATTATATTCAGCTAATCATCCCAAGTACGCACTGATCTTTCTTGTTGGTGACGACGGGATCGATCTGAATGGAGGTTATCCGCCATCGAGGGATCAAGTATGTTGCCCAGGCAAGTACTCCACAAGGGTAGCAGTATGCTCAAGTTGCTTCTCTTTCAGTCATGCCATTTGCAAAATGAACCAATGTGAATACACACGCCCGACATCTCAGCTGCAAGACTGGATACCGAAGTCGAATGAGCGTTCCATTTTAGTGCCCATTCTACCATATAACGACGTAGCTGGGCATTTCGATATAAACACAGGAACAAACAAGGCTCATCATCACGGGGTTTATTAA 3996 43.07 MSQNSKLSCSNVILPAGFKAKRAREHFHGQRCSNLLYPLPFGVILIVGLCYILSLCDGNSVREVEIPDTCKEKAWNMLKHYNVSESQFHALASFFIHSDQAASLQCAEDPGPDIGLKECIACALKMLEEELNLQKQRGWLSENLQPEGQCPIRGEMDSFNNDLLQLVDKTRSLTSQSSFAFVSPCHQIHREKILHSKEIGNEHSRSLNGLVMACLWILAVVISCLKMSSFHLKLRNHKHKPIKHPSVEKQPMIQLQKVLLQKKQLDLSPSPPKGAGKWRKKLLIIFVLLGVIGSFWLFWYLNNKIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTSFERPLTSGVAYALKVNHSERKQFEEEHGWTIKKMGTEDQTLVQDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRTEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASGPIKMYGSDVVDTGLLHISNLDFGDPQRKHEMHCRFKQMPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDCREMMELKTRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQQDYAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEILIGDPGRFRQIITNLVGNSIKFTNDKGHIFVTVHLADELKTPLDAMDSVLRQGLDLVKETSKKCYNTLSGFPVVERCKSWEHFEIFSRTDAMKEDDLIKLLVSVEDTGHGIPLEAQSRIFTPFMQADSSTSRKYGGTGIGLSISKCLVELMGGEIGFVSHPSVGSTFSFTGSLRKGDTRSLDTKWQQNDPTVLDFRGLQALVIDNRSIRAEVTKYHLKRLGISVDIVSSLVSAHEYIRNNCIKSPSKSLAMVLIDKDVWDNQTGPTIARVFKEHGVNGKESTRSPKIFLLATSDLQETRALKSTGYINNVMTKPLRLGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAAISLLKPPHKFHACFMDLQMPEMDGFTATREIRNIEKKVSEDIASGKASSDMFGNVAVWHTPVLAMTADVIQATNEACMACGMDGYVAKPFEEEKLYSANHPKYALIFLVGDDGIDLNGGYPPSRDQVCCPGKYSTRVAVCSSCFSFSHAICKMNQCEYTRPTSQLQDWIPKSNERSILVPILPYNDVAGHFDINTGTNKAHHHGVY 1331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8585756 8597208 - CmaCh11G012850.1 Cma11g01285 303794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01285 1331 Coils Coil 612 632 - -
Cma11g01285 1331 Gene3D - 301 353 - -
Cma11g01285 1331 PANTHER TWO-COMPONENT HISTIDINE KINASE 269 1223 - -
Cma11g01285 1331 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 747 914 IPR003594 -
Cma11g01285 1331 Gene3D - 699 920 IPR036890 -
Cma11g01285 1331 ProSiteProfiles Response regulatory domain profile. 1091 1228 IPR001789 GO:0000160
Cma11g01285 1331 Gene3D - 607 698 - -
Cma11g01285 1331 Gene3D - 1076 1227 - -
Cma11g01285 1331 SMART CHASE_2 350 549 IPR006189 -
Cma11g01285 1331 PANTHER HISTIDINE KINASE 2 269 1223 - -
Cma11g01285 1331 CDD HATPase_EvgS-ArcB-TorS-like 752 914 - -
Cma11g01285 1331 CDD HisKA 635 696 IPR003661 GO:0000155|GO:0007165
Cma11g01285 1331 Pfam CHASE domain 353 547 IPR006189 -
Cma11g01285 1331 Gene3D - 936 1075 - -
Cma11g01285 1331 Pfam Response regulator receiver domain 1092 1222 IPR001789 GO:0000160
Cma11g01285 1331 SMART HisKA_10 635 700 IPR003661 GO:0000155|GO:0007165
Cma11g01285 1331 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 689 914 IPR036890 -
Cma11g01285 1331 SMART REC_2 1090 1224 IPR001789 GO:0000160
Cma11g01285 1331 SMART HKATPase_4 747 919 IPR003594 -
Cma11g01285 1331 PRINTS Bacterial sensor protein C-terminal signature 844 858 IPR004358 GO:0016310|GO:0016772
Cma11g01285 1331 PRINTS Bacterial sensor protein C-terminal signature 862 872 IPR004358 GO:0016310|GO:0016772
Cma11g01285 1331 PRINTS Bacterial sensor protein C-terminal signature 879 897 IPR004358 GO:0016310|GO:0016772
Cma11g01285 1331 CDD REC_hyHK_CKI1_RcsC-like 1092 1223 - -
Cma11g01285 1331 Gene3D CHASE domain 354 580 IPR042240 -
Cma11g01285 1331 SUPERFAMILY CheY-like 1088 1223 IPR011006 -
Cma11g01285 1331 ProSiteProfiles CHASE domain profile. 350 574 IPR006189 -
Cma11g01285 1331 ProSiteProfiles Response regulatory domain profile. 943 1072 IPR001789 GO:0000160
Cma11g01285 1331 SUPERFAMILY CheY-like 938 1073 IPR011006 -
Cma11g01285 1331 ProSiteProfiles Histidine kinase domain profile. 642 919 IPR005467 -
Cma11g01285 1331 Pfam His Kinase A (phospho-acceptor) domain 635 700 IPR003661 GO:0000155|GO:0007165
Cma11g01285 1331 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 621 701 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00221 Cma-Chr2:978809 Cma11g01285 Cma-Chr11:8585756 0 dispersed
Cma11g01285 Cma-Chr11:8585756 Cma17g01443 Cma-Chr17:9486488 0 dispersed
Cma11g01285 Cma-Chr11:8585756 Cma20g00673 Cma-Chr20:3087195 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35880 PF03924 CHASE 7.70E-36 CL0165 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01285 K14489 - tcc:18612437 1563.9