Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01288 ATGGCCACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGCCTGCCTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGCGCTTTCGGTGGCAGCCGCTTCACCATGCGGCGGACGGTCAAGAGTGCCCCTCAAAGCATATGGTATGGTCCAGATCGCCCAAAATACTTGGGACCCTTCTCTGAACAAACACCATCCTACCTGACTGGAGAGTTCCCAGGTGACTACGGCTGGGACACAGCCGGTCTGTCAGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCCAGATGGGCCATGCTCGGTGCACTAGGCTGTGTCTTCCCTGAAGTCCTTGCAAAGAATGGTGTCAAGTTCGGTGAATCAGTATGGTTCAAGGCCGGTTCTCAGATCTTCTCCGAAGGTGGCCTCGATTACCTTGGCAACCCAAACCTCGTCCACGCTCAGAGCATCCTGGCCATCTGGGCTTGCCAGGTTGTGCTGATGGGGTTCGTGGAAGGCTACCGGGTTGGGGGCGGTCCCCTTGGTGAAGGGCTGGACCCAATCTACCCAGGAGGGGCGTTCGACCCACTGGGATTGGCGGATGACCCAGATGCCTTTGCTGAGTTGAAGGTGAAGGAGCTGAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTCGTGCAGGCTATTGTCACTGGAAAGGGTCCTATTGAGAATCTGTTCGACCATGTTGCAGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCCAGAAAATGA 798 56.02 MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPRK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8614659 8617451 - CmaCh11G012880.1 Cma11g01288 303797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01288 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cma11g01288 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Cma11g01288 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cma11g01288 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 264 - -
Cma11g01288 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00918 Cma-Chr4:4748020 Cma11g01288 Cma-Chr11:8614659 4.05E-124 dispersed
Cma09g00012 Cma-Chr9:81081 Cma11g01288 Cma-Chr11:8614659 1.49E-63 dispersed
Cma11g01288 Cma-Chr11:8614659 Cma01g00265 Cma-Chr1:1250267 1.99E-150 dispersed
Cma16g00808 Cma-Chr16:4464485 Cma11g01288 Cma-Chr11:8614659 1.72E-123 dispersed
Cma11g01288 Cma-Chr11:8614659 Cma19g00866 Cma-Chr19:8059990 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01288 K08913 - csv:101212963 536.954