Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01293 ATGCTTCTGTGCAAGAGAGATTCAACTACCTTGGTTGCTGTTCTTGTGGCTTGTGTGGTATTGCTCTTTGGAGCTGTGAGCAGCCAACCGAGCCTTGAGCCTCGTTTTGCCTATGTTGGATTCAATGAAAGGGAGCACAACCAAGACTTCTCCTTCACTCAAGGGTCGTCTTCCATCGATGAGGGCGCCCTGCAGCTAACTCCCGACTCGCAGAACGATATTGTTCGCCTTCAAAATACGTCTGGCCGGATTATGTACCACCAGCCCTTCAAGTTATGGCTAGATGAAGAGGGAGATGACATTGTTGCTTCTTTCAACTCATACTTTTACATCAATATTTTCAGAAAGAAAGAATGGAATGCCGGTGAGGGGCTTACTTTTCTTATAGCTCCGACTGCTGATGTACCTGATCAGAGCTGGGGGCAGTGGATGGGCCTCACCAATGCAACTACCGATGGCAGCATCACAAACCAAATTGTAGCCATTGAATTTGATACCCAGAAGCAGGATTTCGACCCCGATGACAACCATATCGGTCTGAACGTCAACTCCATTCGATCGAGGAAGACTGTTTCCTTGAATAAAGCTGGCATAGTTTTATCCCCAGAGATTGGAACCAATTACAGCATCTGGGTTGTTTATGATGGAATATCCAAACTTTTGCAGGTTTACATGTCTGCAAACAAAGATCCAAAACCTGATAAACCTCTTCTCAATGAAACAATAAACCTCAAACAGTATGTGAAACAAGAATCATATATTGGATTTTCTGCTTCCACAGGCAGCCCGGAAATTCAGTTGAACTGTGTCTTGGAATGGATGCTGGATTTGGAACATCTGGCAGAGAAGAAAAATCTAATTTGGTTGAAGATCCTTGCCGGGGTTGGAATCCCGATACTAACGATCGTGATTCTGATTGGGGTTTGGTTATTTGTTAGTTATATGAAGAGGAGAAGAGTGAGCAGGGACGAGGAGTCGAATGTTCAGGGCACGCTGAAGAGGTTGCCGGGAATGCCGAGAGAGTTCAAGTACAAGGAACTAAGGAAGGCGACTCATAACTTCCATGAAAGCATGGTTCTGGGAAATGGAGGCTTCGGGGTTGTTTACAAAGGAATTCTAGAAGAAAAGGATAAGGACTTCACTGCATCATCAAGTTCTGTTGCCAGGCTTGAAGTTGCTGTCAAGAAATTCTCCAGGGACAGCATTAAGAGCAAAGGCGATTTTCTGGACGAGCTCACCATTATTCACCGTCTTCGCCACAGGAACCTCGTCCGTTTAGAAGGGTGGTGCTACGAGAAAGGGAAGCTTTTATTAGTATATGATTTCATGCCTAATGGAAGCCTTGAGAATCACCTGTATGACATTGCTGACCAGAATGTTCTCAACTGGAGACATCGCTATAAAATCCTTGTAGGAGTTGCATCAGCGTTGCATTACCTGCATAATGAGTACGACCAGAAGGTATTGCACCGAGATATCAAATCAAGCAATATCTTACTTGATTCCGACTTCCATGCTCGTCTAGGAGATTTCGGCCTTGCGAGAGCGTTGGACCCTGAAAGAAACTCTTATGCAGACCTCCAACATGGAGGAGTTGCAGGCACAATGGGTTATGTTGCTCCTGAATGCTTCCACGAAGGAAGGGCGACTCCAGAATCCGACGTATATGGTTTTGGGGCAGTGGTGCTTGAGATTGTTTGTGGCAGGAGACCAGGAGCTCCTGTGAAAGACGAGCAACATCAATATAACTTAGTTGATTGGGTGTGGAAGGTACACCGTGAAGGACATATCGAAAAAGCAGTCGATAACCAGCTTGGTGATGATATTGTGGTCGATGAAGCTAGGAGGCTTCTACTACTTGGGTTGGCATGTTCACATCCCATGGCAAGTGAACGGCCACAAAGTCAGGATATACTCCAAATTTTAAATGGAGCTTTGCCTGCACCTCGTGTACCTCCATTCAAGCCAGTCTTCATGTGGCCTCCCATGAACACTACCTCCTCCACCAGTAACAATCTCAGTTCACTGTCAAACACAAATAACTCTCTTTGA 2052 45.47 MLLCKRDSTTLVAVLVACVVLLFGAVSSQPSLEPRFAYVGFNEREHNQDFSFTQGSSSIDEGALQLTPDSQNDIVRLQNTSGRIMYHQPFKLWLDEEGDDIVASFNSYFYINIFRKKEWNAGEGLTFLIAPTADVPDQSWGQWMGLTNATTDGSITNQIVAIEFDTQKQDFDPDDNHIGLNVNSIRSRKTVSLNKAGIVLSPEIGTNYSIWVVYDGISKLLQVYMSANKDPKPDKPLLNETINLKQYVKQESYIGFSASTGSPEIQLNCVLEWMLDLEHLAEKKNLIWLKILAGVGIPILTIVILIGVWLFVSYMKRRRVSRDEESNVQGTLKRLPGMPREFKYKELRKATHNFHESMVLGNGGFGVVYKGILEEKDKDFTASSSSVARLEVAVKKFSRDSIKSKGDFLDELTIIHRLRHRNLVRLEGWCYEKGKLLLVYDFMPNGSLENHLYDIADQNVLNWRHRYKILVGVASALHYLHNEYDQKVLHRDIKSSNILLDSDFHARLGDFGLARALDPERNSYADLQHGGVAGTMGYVAPECFHEGRATPESDVYGFGAVVLEIVCGRRPGAPVKDEQHQYNLVDWVWKVHREGHIEKAVDNQLGDDIVVDEARRLLLLGLACSHPMASERPQSQDILQILNGALPAPRVPPFKPVFMWPPMNTTSSTSNNLSSLSNTNNSL 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8634877 8638172 + CmaCh11G012930.1 Cma11g01293 303802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01293 683 ProSiteProfiles Protein kinase domain profile. 354 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01293 683 Gene3D - 33 290 - -
Cma11g01293 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Cma11g01293 683 PANTHER - 10 680 - -
Cma11g01293 683 SMART serkin_6 354 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01293 683 Pfam Legume lectin domain 35 285 IPR001220 GO:0030246
Cma11g01293 683 Gene3D Transferase(Phosphotransferase) domain 1 443 657 - -
Cma11g01293 683 SUPERFAMILY Protein kinase-like (PK-like) 337 671 IPR011009 -
Cma11g01293 683 Pfam Protein tyrosine and serine/threonine kinase 358 580 IPR001245 GO:0004672|GO:0006468
Cma11g01293 683 Gene3D Phosphorylase Kinase; domain 1 339 442 - -
Cma11g01293 683 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cma11g01293 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 10 680 - -
Cma11g01293 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 289 IPR013320 -
Cma11g01293 683 CDD lectin_legume_LecRK_Arcelin_ConA 36 273 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01293 - - - cpep:111792914 1323.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01293 Cma19g00825 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01293 Cma-Chr11:8634877 Cma16g00960 Cma-Chr16:7435658 3.82E-131 dispersed
Cma06g00104 Cma-Chr6:566315 Cma11g01293 Cma-Chr11:8634877 3.58E-135 transposed
Cma14g00407 Cma-Chr14:1900892 Cma11g01293 Cma-Chr11:8634877 1.26E-120 transposed
Cma11g01293 Cma-Chr11:8634877 Cma19g00825 Cma-Chr19:7857276 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68912 PF07714 PK_Tyr_Ser-Thr 4.80E-44 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01293 Cma_Chr11 FPKM 5.596945 6.392945 0.80737 0.939039 0.333088 0.227165 0.409177 1.028507 0.917428 0.917231