Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01303 ATGGGTTACATATGTGATTTCTGTGGGCATCAAAGGTCGACTGTTTACTGTCGATCCGATTCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCCTGTCGAGGCGCCACTTGAGGGCGTTGTTATGTGATAGGTGTCATTCACAAGCTGCATTTGTTAGATATCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCATCTGCTTCCATTTCGTCCCGAAAGAGGCAACCAATCAATTGTTTCTCAGGATGCCCGACAGCTGCAGAACTCTCATCTATCTGGTCGTTTGTTCTAGATCTCCCGTCTGTAGGTGATGCTTGTGAACAAGAATTAGGATTAATGAGCATTGCTGAAAATAGTGCAGTAAATGACTGGGGCCCTGATGATCAAGCTGGTCAAAATGTATCTGGTGCAGATCAAACCAATGAATTCTCAAATGAGGATAGATCAATTTGGTATGGCTCCTCTTCAATGCCTCAATATCCATCCAAGCCTCACGTCATGGACCAACCAATGAGGATAAATGCAACTTCACCCAAGTTGCACTGTGCTGGAACAAAAGGTCCTGGACTCGATATTGAAGATGACCTCTACGAGAATTTGAATATGGATGAAGATAGTTGGAATCTTGAAAACTATGATGAACTATTTGGTGTATCTCTCAGTTTTTCTGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATGAAAAGTCTGTCCGCCACGAAATCTGGTTGCCCTGGTGTGCCTGCAGCAGAGGGAGCGTTCGTTGGTTTAGTTAATAATACGATGCGTCCAGCGAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCGAAGACTGAACCGATTCTCTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGCGCAGGCGAACCTCAAGACTGTGGAGCTTCACCAATGCTTCTAATGGGAGAGCCTCCTTGCTGTTCTATGGCCACTGAGAGTTCTTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTACAAGGAAAAGAAGAAAGCTCGTAAGTTTGAAAAGAAGGTGAGGTATGCTTCTCGCAAAGAGAGGGCCGATATTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCGTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1242 44.2 MGYICDFCGHQRSTVYCRSDSAALCLSCDRNVHSANALSRRHLRALLCDRCHSQAAFVRYPEENISLCQNCDYMGHSSSASISSRKRQPINCFSGCPTAAELSSIWSFVLDLPSVGDACEQELGLMSIAENSAVNDWGPDDQAGQNVSGADQTNEFSNEDRSIWYGSSSMPQYPSKPHVMDQPMRINATSPKLHCAGTKGPGLDIEDDLYENLNMDEDSWNLENYDELFGVSLSFSEELLENGGIDSLFRMKSLSATKSGCPGVPAAEGAFVGLVNNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTGESSAGEPQDCGASPMLLMGEPPCCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKERADIRRRVKGRFVKAGEAYDYDPLNQTRSY 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8677273 8681428 + CmaCh11G013030.1 Cma11g01303 303812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01303 413 CDD Bbox1_BBX-like 4 47 - -
Cma11g01303 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
Cma11g01303 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma11g01303 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Cma11g01303 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 413 - -
Cma11g01303 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 413 - -
Cma11g01303 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00242 Cma-Chr2:1075294 Cma11g01303 Cma-Chr11:8677273 1.77E-153 dispersed
Cma11g01303 Cma-Chr11:8677273 Cma20g00636 Cma-Chr20:2965397 2.52E-64 dispersed
Cma11g01303 Cma-Chr11:8677273 Cma19g00837 Cma-Chr19:7927917 0 wgd
Cma11g01303 Cma-Chr11:8677273 Cma20g00703 Cma-Chr20:3247766 1.38E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35882 PF06203 CCT 9.50E-16 CL0281 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01303 - - csv:101216326 699.123