Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01329 ATGAACATGGTTTGGCTCCTTTTATTACTCCTTTATATCTCAGAAGGGAGCTCAGGACATGAGGTAGTGAAAGTTGGAGCTATATTTTCACTTACTTCTGTCAATGGGAAAGTGTCCAAGATAGCCATAGAGGCTGCTGAGAGAGACGTGAATGCTGATCCAAGTGTTCTTGGTGGAAGAAAGTTATCCATATCCATTCATGATGCTAATTACAGTGGTTTTCTTGGTATCACAGGAGCAATGAAGTACATGACGTCTGGCACAGTTGCCATCATCGGTCCTCAAGATGCTACAATGGCACAGATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTATCATACACAGCCTTGGACCCAGCACTTGCGACTTCGCAGTATCCATACTTCATTCAAACAGCTCCAAATGATCAGTTCCAAATGGCTGCAATTACAGACATTATCGGTTATTATGATTGGCACGACATAGTCGTTGTTTACACCGACGATGATCACTGTCGAAACGGTATGGTTGCATTAGGAGATAAACTTGAAGAGAGAGGGTTAAAAATTTCCTCTAAAGTGGCACTTCCCCCTTACCCAACAGCAACTAGAACAGATGTTCGAGATGCACTTCTAAAGATAAAAACGATGGAATCTCGAGTGATCGTATTGCACACATTCTCGAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTGGAATGATGGAGGCTGGATTTGTGTGGATAGCTTCTAGTTGGTTGTCAACAGTAATAGATTCTTATTCACCACTTCCCTTGAAAACTACCAACTCCATCCAAGGAGTTCTTACGCTTCGACTGTACACACCGAGTTCCAAAAGGAAGCGATCTTTTATATCTCGTTGGAACAAGCTGAGTAATGGCTCGGTTGGGTTGAATGCATACAGCCTATATGCATATGATACTGTTTGGATGATTGCAAAAGGATTAAAAGAGTTATTTGATCAAAATGGCACCATTTCCTTCTCCAAAGATGAACGTGTTGGCAGTCTTAGTGGAGAGAGCTTGGATTTTAGCTCACTAGGAATCTTTAATGAAGGAAAGGAACTGCTTAACAATGTATTGAACATCAGCATGACTGGTCTGACAGGGCCTATTCAGTTTCTAGATAGATACCCTTTACATCCTTCATATGATATCTTAAATGTTGTGAAATCTGGTATGAAGAGAATTGGGTATTGGTCCAACTATTCCGGGTTATCTATCGTGACACCAGAAACGTTGTATGAACGATCAGCCAATCATTCTACATCGTCCCAACAGTTAAGCAGCATAGTGTGGCCTGGGGGATCGAGAATAAAGCCTCGTGGTTGGGTTCTACCACTCGATGGAAGGCGGTTAAGAATCGGCGTTCCACATAGAGTTAGTTATCAGGAATTTGTGACACCGGGTAATGGTAATGGCACAATCAGAGGATACTGCATAGATGTGTTCACTGCTGCCATAAACTTGCTTCCATATGCAGTGAATTATGAGTTTGTTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACTTTGAGCTTGTAAATAATGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACTTTGCTATTGTGACTAGTCGGACAAAGGTTGTCGACTTTACGCAGCCTTATATCGACTCGGGGTTGGTCGTTATGGTCCTTGTCAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGATTGCCACAGCAGCCTTTTTCCTCCTCATTGGATTAGTCGTGTGGATTTTGGAACATCGAAAAAACAATGAATTCCGCGGACATCCCAGGACGCAACTTGTCACGATCCTCTGGTTTGGCTTCTCTACAATGTTTTTTTCACATAGAGAAAACGTCGTGAGCACGCTCGGACGTTGTGTGCTTGTCATCTGGCTTTTCGTGGTTCTAATTATCAATTCGAGCTACACCGCTAGTCTAACATCCATATTCACAGTACAACAACTATCCTCACCTATCACAGGAATTGATTCATTGATATCTAGCCATGTACCTATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTACTTAAGTGAGCAACTTAACGTCCAAAAGTCTAGGCTAATTGCTCTTGGATCCCCAAAGGAGTATGCTGCTGCCCTAAAAAACGGAACGGTTGGAGCTATTGTCGACGAACAACCATACATCGACCTCTTTCTCACAGAGTACTGCGATTTTTCAATTAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTAGCAGTCGACTTATCGACCGCCATACTAACTCTATCAGAGAGCGGCCGCCTTCAAAAGCTTCACGATAAGTGGTTCTCAAGAAAGTCTTGCAGTTCTGGAGAATCTGATTTAGAACAGCTTCAGTTACAGAGTTTCATCGGTCTGTTCTCCATTTGTGCCGGCGTATGTTTACTCGCTCTTCTGCTTCACTTTTTCTTGACGATTTGCCAATTCAACCGCCAGTTGAAACGAGATCCAGAAGCTTCGCCGTCGACCAGCGGCAGTTCTACTTCTACCCCTACGCGTCTGCGGAAATTCTTGGCGTTTGCAGACAAAAAGAAGAATCGAAAGACGAGATATTCGAAAAGAAAGATCGAAGATAATAATGCATTTCCGAGTGAACGTCGACAAGATTTTGTAAATTGA 2712 42.66 MNMVWLLLLLLYISEGSSGHEVVKVGAIFSLTSVNGKVSKIAIEAAERDVNADPSVLGGRKLSISIHDANYSGFLGITGAMKYMTSGTVAIIGPQDATMAQILSHLSNELHVPLLSYTALDPALATSQYPYFIQTAPNDQFQMAAITDIIGYYDWHDIVVVYTDDDHCRNGMVALGDKLEERGLKISSKVALPPYPTATRTDVRDALLKIKTMESRVIVLHTFSKTGFLVFEVAQSLGMMEAGFVWIASSWLSTVIDSYSPLPLKTTNSIQGVLTLRLYTPSSKRKRSFISRWNKLSNGSVGLNAYSLYAYDTVWMIAKGLKELFDQNGTISFSKDERVGSLSGESLDFSSLGIFNEGKELLNNVLNISMTGLTGPIQFLDRYPLHPSYDILNVVKSGMKRIGYWSNYSGLSIVTPETLYERSANHSTSSQQLSSIVWPGGSRIKPRGWVLPLDGRRLRIGVPHRVSYQEFVTPGNGNGTIRGYCIDVFTAAINLLPYAVNYEFVLFGDGEKNPSYFELVNNVALKEFDAAVGDFAIVTSRTKVVDFTQPYIDSGLVVMVLVKKLNSSPLAFLRPFTPMMWIATAAFFLLIGLVVWILEHRKNNEFRGHPRTQLVTILWFGFSTMFFSHRENVVSTLGRCVLVIWLFVVLIINSSYTASLTSIFTVQQLSSPITGIDSLISSHVPIGFQVGSFAESYLSEQLNVQKSRLIALGSPKEYAAALKNGTVGAIVDEQPYIDLFLTEYCDFSIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSESGRLQKLHDKWFSRKSCSSGESDLEQLQLQSFIGLFSICAGVCLLALLLHFFLTICQFNRQLKRDPEASPSTSGSSTSTPTRLRKFLAFADKKKNRKTRYSKRKIEDNNAFPSERRQDFVN 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8810190 8814623 - CmaCh11G013290.1 Cma11g01329 303838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01329 903 MobiDBLite consensus disorder prediction 883 903 - -
Cma11g01329 903 Gene3D - 452 568 - -
Cma11g01329 903 Pfam Receptor family ligand binding region 41 396 IPR001828 -
Cma11g01329 903 PIRSF IGluLR_plant 1 901 IPR017103 -
Cma11g01329 903 CDD PBP1_GABAb_receptor_plant 24 414 IPR044440 -
Cma11g01329 903 CDD GluR_Plant 456 794 - -
Cma11g01329 903 Gene3D - 138 411 - -
Cma11g01329 903 MobiDBLite consensus disorder prediction 846 903 - -
Cma11g01329 903 Gene3D - 720 801 - -
Cma11g01329 903 SUPERFAMILY Periplasmic binding protein-like II 434 796 - -
Cma11g01329 903 SMART GluR_14 459 796 IPR001320 GO:0015276|GO:0016020
Cma11g01329 903 Pfam Bacterial extracellular solute-binding proteins, family 3 471 795 IPR001638 -
Cma11g01329 903 Pfam Ligand-gated ion channel 796 824 IPR001320 GO:0015276|GO:0016020
Cma11g01329 903 Gene3D - 41 386 - -
Cma11g01329 903 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 886 - -
Cma11g01329 903 Gene3D - 569 708 - -
Cma11g01329 903 MobiDBLite consensus disorder prediction 846 865 - -
Cma11g01329 903 PANTHER GLUTAMATE RECEPTOR 3.6 17 886 - -
Cma11g01329 903 SUPERFAMILY Periplasmic binding protein-like I 17 449 IPR028082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01329 Cma19g00801 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01329 Cma-Chr11:8810190 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma11g01329 Cma-Chr11:8810190 Cma19g00801 Cma-Chr19:7732635 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01329 K05387 - csv:101208602 1427.92