Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01331 ATGGCATCGGCGCAGAACTCAGCGCCGAATGTGGATCTCTTTGATGCATACTTTCGACGTGCCGATTTGGACCGCGATGGTCGAATTAGTGGTGCTGAAGCGGTTGCCTTCTTTCAAGGGTCTGGATTGCCCAAACAGGTTCTTGCTCAGATTTGGGCACTTTCGGACCCGAGACAGATTGGTTTTCTCGGTCGGGCGGAGTTTAATAATGCCCTTAGGCTGGTCACTGTAGCACAGAGTAAGAGGGACCTAACCCCTGATATTGTAAAAGCAGCATTGTTCAGCCCAGCTGCATCTAAAATACCTGCACCACAAATAAATTTCAATACCCCGCCTGCATCTCAGTTCAATTCTACTCCAGCATTACCTACACCTCAGACTGGCATTGGTACTCCAACTCCCCCACAAAGCTCTAGGTTGGAATCACAGGTTGCTCGAAGTGTCACTACGAATGTTTCACCGGTTCCTTCTAGAGAGAATCAATCTGTAAGGCCTCCGTTGGCCACTTCAAATTCTGCTTTCCATCCAGTGCAGGGATTTTCAGGAGTAGGTCCCGTGTCGGGGTCACCTCCAACAAATTCTAGCATCTCGAATGATTGGGTCAGTGACCGTGCTGGTGGAGTTCAGGGGACACCCTCACAACCTCCGAACAGAGGATTCAGTCCTGCTGGAACACAGGTTGGATTTGGGCAATCAAGTGCAGGACTAATAACTTCTCTACCCCCTAGACCTCAGGCTGCTCCTGGAATAAAGTCGGCTACACCATCACCTGTGGATAGTAATGTGCAAGGTTTTTCTGAAAATAGGATTGCTTCTGGATCATATATTGGAGGAGGGCACTTTGCTGCAAGTTCTGTTCCCTCAAAACAAGATGTCCCCTCAGATAAATTGTCGACTGGCAATATCAGTTCTACATCAGTCACTGTTCCTGTACCTTCGGCTACACAACCAATAGTTAGAGCAGGTTCCCTTGATTCTTCGCAAAATTCATTTATGAAACCACCTCTTGCTAATCAGCCTCCACGGAACCAGCCACTAGGGAAGCCCAATCAACAGAGCATATCGCACCCTGCTTCCTCTGGATTATCAACAGGATCTCAGAACTCTGTTTCTGGTCAATCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACTAAAGTTTTTGTTGTGGTGGATAAAGATAGAGATGGAAAAATTACCGGTGAAGAAGCACGCAATTTGTTCTTGAGTTGGAGACTGCCAAGAGAGGTTTTAAAGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTCTATTTGTTGGAGCGACATAGAGAAGGGCACATTCTTCCTGCTATGCTTCCTAGCAATGTCGTGTTTAATTTTTCCAGCAATGGTCATCCTGTGACTCCGGCTGCATCTAACTATAGCAATGCAGCTTGGAGACCTACAGCTGGTTACCAACAGCACCAAGGGGTTCCTGAGTCTGGTAATCTGCATGGAGCTCCTATAGTTGGAGTACGACCGCCTACACCTGCTGCTGCCTCCCTGGTTGAGGATGAGCCACAGACCAATAAGCCAAAATCAAAGGTTCCTGTGCTGGAGAAAAATCTTGTTAGTCAACTTAGTACAGAGGAGCAGAACTCCCTCAACTCAAAGTTCCAAGAAGCAGCAGATGCGGAGAAAAAGGTTGAAGAATTGGAGAAGGAAATTTTGGAATCTAGACAGAAAATTGAGTATTATCGTACTAAAATGCAAGAACTTGTCTTGTACAAGAGCAGATGTGACAATCGGCTGAATGAAATATCTGAAAGAGTGTCTTCAGAAAAACGTGAGGTAGAGTCCCTTGCTAAGAAATATGAAGAGAAATACAAACAATCTGGTGATGTAGCCTCCAGATTAACCGTTGAAGAAGCTACATTCCGTGATATACAGGAGAAGAAGATGGAACTGTATCATGCGATTGTGAAGATGGAACAAGATGGTAGTGAAGATGGTATTATTCAGGTTCGTGCTGATCGTATTCAAGCAGATATAGAAGAATTAGTGAAATCTCTCAATGAACGCTGCAAGAGTTATGGTTTGCGTGCGAAACCAATAACTCTGAGTGAACTACCTTTCGGCTGGCAACCTGGCATCCAAGTGGGAGCTGCTGACTGGGACGAGGATTGGGATAAATTTGAGGAGGAAGGTTTCACTGTTGTCAAGGAACTCACTCTTGATGTGCAGAATGTCATTGCACCTCCAAAGCAGAAATCCAAATCTGATTCGGCGCAAAAAGAACAAGGTTCAGCTATTGACAGCCAAAAAGTTACACCTGCACCAGATGTTGATACCAAGGACGGAGGTTCTACACCTGATGCTGATTCCAAGGGAGAGAAACCTCCTAGTATGGATGAAAAAGCTGTTGAAAATGGTTCCGTACACGATAATAAAAGTGAAGATGGATCAGCCAGAAGTGCTCCTAACAGCCCCTTTGCAAGTAGTGTTATTGAAAGTCCCAAGGAACACAGGGATTCCAATTTTGGGAAGGCTGCTGGCTTTGATGCTTCACCCCGTGACAAGGACACTCAATATAGGGATTCCAATCTTGGGAAGGCTGCTGGCTTTGATGCTTCACCCCGTGATAAGGACGCTCTAAGTGATCATGGAGGTGCGGGATCTGTGTTTTCTGGTGACAAGAGCTATGACGAACCTGCTTGGGGAACATTCGATATGAATGATGATATTGACTCTGTTTGGGGCTTCAACGCTGGAGGTTCCACTAAGACTGACAATGATGTTATCCAAGACAACTATTTTTTCGATTCTGGGGACTTGGGCTTGAATCCTATAAGAACAGAACCATTCCAAGCCAAGAGAAGTACATTTGCGTTCGATGAGTCTGTTCCTAGCACCCCACTCTTCAACTCGGGCAATTCTCCGAACAGTTACCACGAGGGATCAGAACCAAGTTTTGAGAGCTTCTCAAGGTTTGATTCTTCCAGTGTGCATGAAGGTGGTTTCCCTCCACGAGATACATTTGCACGATTCGACTCGATGCACAGCAGTAGAGACTTCGACCAGGGCCCTGGATTCTCATCATTTGGTCAGTTTGATACATCACGCAGCAGTAGAGACTTTGACCAGGGTGGATCCTCATTGACGCGATTCGATTCAATGCGCAGCAGTAAAGACTTTGATCAGGAATTCCCTTCATTGTCACGGTTCGATTCGATGCGCAGCAGCAAAGATTTTGATCAAGGCCATGGATTTCCATCATTCGATGATGCAGACTTTGGATCGACAGGGCCGTTTCAGGCATCCCTGGATAATCAAACTCCAAAGAAAGGATCAGATAACTGGAGTGCATTTTAG 3384 45.92 MASAQNSAPNVDLFDAYFRRADLDRDGRISGAEAVAFFQGSGLPKQVLAQIWALSDPRQIGFLGRAEFNNALRLVTVAQSKRDLTPDIVKAALFSPAASKIPAPQINFNTPPASQFNSTPALPTPQTGIGTPTPPQSSRLESQVARSVTTNVSPVPSRENQSVRPPLATSNSAFHPVQGFSGVGPVSGSPPTNSSISNDWVSDRAGGVQGTPSQPPNRGFSPAGTQVGFGQSSAGLITSLPPRPQAAPGIKSATPSPVDSNVQGFSENRIASGSYIGGGHFAASSVPSKQDVPSDKLSTGNISSTSVTVPVPSATQPIVRAGSLDSSQNSFMKPPLANQPPRNQPLGKPNQQSISHPASSGLSTGSQNSVSGQSQRPWPRMTQTDVQKYTKVFVVVDKDRDGKITGEEARNLFLSWRLPREVLKQVWDLSDQDNDSMLSVREFCIALYLLERHREGHILPAMLPSNVVFNFSSNGHPVTPAASNYSNAAWRPTAGYQQHQGVPESGNLHGAPIVGVRPPTPAAASLVEDEPQTNKPKSKVPVLEKNLVSQLSTEEQNSLNSKFQEAADAEKKVEELEKEILESRQKIEYYRTKMQELVLYKSRCDNRLNEISERVSSEKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYHAIVKMEQDGSEDGIIQVRADRIQADIEELVKSLNERCKSYGLRAKPITLSELPFGWQPGIQVGAADWDEDWDKFEEEGFTVVKELTLDVQNVIAPPKQKSKSDSAQKEQGSAIDSQKVTPAPDVDTKDGGSTPDADSKGEKPPSMDEKAVENGSVHDNKSEDGSARSAPNSPFASSVIESPKEHRDSNFGKAAGFDASPRDKDTQYRDSNLGKAAGFDASPRDKDALSDHGGAGSVFSGDKSYDEPAWGTFDMNDDIDSVWGFNAGGSTKTDNDVIQDNYFFDSGDLGLNPIRTEPFQAKRSTFAFDESVPSTPLFNSGNSPNSYHEGSEPSFESFSRFDSSSVHEGGFPPRDTFARFDSMHSSRDFDQGPGFSSFGQFDTSRSSRDFDQGGSSLTRFDSMRSSKDFDQEFPSLSRFDSMRSSKDFDQGHGFPSFDDADFGSTGPFQASLDNQTPKKGSDNWSAF 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8820271 8828571 - CmaCh11G013310.1 Cma11g01331 303840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01331 1127 MobiDBLite consensus disorder prediction 284 383 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 105 230 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 755 903 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 841 870 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 185 230 - -
Cma11g01331 1127 ProSiteProfiles EH domain profile. 385 468 IPR000261 GO:0005515
Cma11g01331 1127 Gene3D - 366 471 - -
Cma11g01331 1127 Coils Coil 559 593 - -
Cma11g01331 1127 Coils Coil 608 635 - -
Cma11g01331 1127 SMART efh_1 422 450 IPR002048 GO:0005509
Cma11g01331 1127 SMART efh_1 388 416 IPR002048 GO:0005509
Cma11g01331 1127 SMART efh_1 13 41 IPR002048 GO:0005509
Cma11g01331 1127 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Cma11g01331 1127 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Cma11g01331 1127 MobiDBLite consensus disorder prediction 519 539 - -
Cma11g01331 1127 Gene3D - 7 104 - -
Cma11g01331 1127 SUPERFAMILY EF-hand 375 468 IPR011992 -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 1107 1127 - -
Cma11g01331 1127 CDD EH 14 80 IPR000261 GO:0005515
Cma11g01331 1127 SMART eh_3 377 473 IPR000261 GO:0005515
Cma11g01331 1127 SMART eh_3 2 98 IPR000261 GO:0005515
Cma11g01331 1127 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Cma11g01331 1127 MobiDBLite consensus disorder prediction 755 778 - -
Cma11g01331 1127 ProSiteProfiles EF-hand calcium-binding domain profile. 421 453 IPR002048 GO:0005509
Cma11g01331 1127 MobiDBLite consensus disorder prediction 1029 1062 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 287 383 - -
Cma11g01331 1127 Pfam EF hand 15 31 IPR002048 GO:0005509
Cma11g01331 1127 SUPERFAMILY EF-hand 10 89 IPR011992 -
Cma11g01331 1127 Pfam Cytoskeletal-regulatory complex EF hand 379 451 IPR000261 GO:0005515
Cma11g01331 1127 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 8 1049 - -
Cma11g01331 1127 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1055 1127 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 791 825 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 971 1004 - -
Cma11g01331 1127 MobiDBLite consensus disorder prediction 971 1127 - -
Cma11g01331 1127 CDD EH 389 455 IPR000261 GO:0005515
Cma11g01331 1127 MobiDBLite consensus disorder prediction 105 177 - -
Cma11g01331 1127 PANTHER EH DOMAIN 8 1049 - -
Cma11g01331 1127 PANTHER EH DOMAIN 1055 1127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01331 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101215882 1704.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01331 Cma19g00799 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02025 Cma-Chr1:12926790 Cma11g01331 Cma-Chr11:8820271 3.95E-07 dispersed
Cma09g00044 Cma-Chr9:180144 Cma11g01331 Cma-Chr11:8820271 7.16E-07 dispersed
Cma11g01331 Cma-Chr11:8820271 Cma16g00910 Cma-Chr16:6805758 5.13E-06 dispersed
Cma11g01331 Cma-Chr11:8820271 Cma19g00799 Cma-Chr19:7720970 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01331 Cma_Chr11 FPKM 15.281987 17.109146 14.824485 14.429418 13.992482 13.26121 13.313971 16.862576 15.725904 15.094755