Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01333 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTAAAGGAACAGCAAGAACAAGAGGATGAAGAGCAGAAGCAACAGAATCACAACAAACCCAAGCGAATCGACCGCTCCTCCGCAATTCCCAACCCTAATTACGCTTCTTCTACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACCCGGACGGACTCACTCCAGATGACCTCGCCGATGACCACGACGATGCCGAATACAACCAAGAATTGGCCAGGAACAGCCGCGAGAGGAAACTCAAGCTCGTTCTCAGATTGCACTCTCAGAAACCTCCCGTCAATTCGTCCTCTCTCAATTCCGGTGGTTCCGATTCTAATGCGGAGGGGGACGATAATGTTGCGTCGGCTAATAAGAAGCGGAAGATCGGTTCAATTGCGGAGGGATCTAGGATCCAAGACTCCGAGAAGGGTGAAAAGTCCGTTTCTGCTACAAACCCATCGGAAACCCTTCAAGGGTCGCATATGGATTCGGGACCCTCGACGCTTTTACCTGATAAGAAGCTTTTACTCTTCATCCTTGACAGGCTTCAAAAGTGTGTTTTTTCAGCTCATCTTTCTGTGTGCTTTAATTCCAGGAAGGATATCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCATGAAATTATAGAGCATCCGATGGATTTTGGGACTGTTCGTGAGAAGCTTACTTCTGGAGCTTATATCAGTTTGGAACAGTTTGAAAAAGACGTTCTCTTAATCAGTTCGAATGCAATGCAATATAATGCCCCAGATACCATATATTTTCGGCAGGCACGTACCATACAAGAGTTAGCAAAAAAGAATTTTAAGAACCTGAGACAAGATAGTGATGATAATGAACCAGAGCCTAAAGTAGCAAGAAGAGGTAGACCACCGACCAAGCATTTGAAAAAACCATTGGGTCGACCTTCCTTGGAACGTGCTGGTTCCGAGTTTTCCCTGGATGCCACTCTTGCTACTGGTGGTGAAAACGCAAATAGGTCGAACGATTTGAGGAAAGGATTTCATCATTTCGAAAAAACTAGTTTAGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCCAATAGTGATGCTGCTGCATTTAATTTGTTTAACCAGAGCAGAATTGATAGAAGCGATGATATTACAGGTTCCGGACTGAGAATTAATTCAGTGAGACAGGGGAAAAGACCAATTGTCTCTGATGAGAATAGGCGTAACACATATCAGCAATTTCAAGCGGCAGCTGCTTTGCTAGAGCCTTCTGTGTTGAATACATTTGATAGAGAGAGGAAGCTTTTAATGCCAGTCGGACTTTTTTTGGAGCATGCTTATGCACGAAGCCTCGCTCGATTCGCTGCAGATCTTGGATCTGTAGCTTGGAGAGTTGCTTCTAAGAAGATCGAAAGATCTTTACCAGCAGGTTCAGGTTTTGGTCCTGGATGGGTTGTAGAAAATGATACCACACCAAAGAGAGTGTTTCTACCTCAAGCTGAACTCTGTCAAATGTCAACATTACAGCCCTATGCTGCAGATGTAAAGCCTCTTGCTCCTGAACAAAAGGGCGTTCGATCATCCGACAACTCCGAAGCTGATACTTCATCTAAGACACATGACGATGAGCCTTCTCATGCCCCCAGTTCAGATGGCCATTTAAGTAGGCCTCCCACTGAGTTTGCTGCAACTTCATCATCACTGTCGAGTACTCAACGATCTACTGAGCCGTGCAGGGGACAGGCTGAAGCAGTTGAAGGATTGATTCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAACCTCAAGGCCTTCATTTCAGAAACAACGCCAGACTCCAACAATCCGCCCTGGTATGAATGGATTCAATGGTACTTATGCCGTTGATCTCTCTGCTCACAAGGGGAAACTAATAGGAGCATTCGAGCCCGCTGGTGAACAACCTCATTCATCTCGAACGCTCGAGACGACGACCTCCAGGACTAATGCTAACTTCATCCATCCAGCAACGGATTCCAGTACAACAAACTCTTCCAGTTCATTGCTCAGGTCGGGGAACGAGGCTCATTCGCAGGGGCCATCACCAGCAGAAAAAACAACAACAATACACCACAAACCGGAATCAGTTCCCCCGGACGTGAACGCGAGATTTAAATCTCCAGGATCTCCTAGCTGTAGTAAGGTGGAGTGTGGTAACCCTGATTTAGTATTGCAGCTATGA 2289 46.09 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEDEEQKQQNHNKPKRIDRSSAIPNPNYASSTPLRRSTRRNPNPDGLTPDDLADDHDDAEYNQELARNSRERKLKLVLRLHSQKPPVNSSSLNSGGSDSNAEGDDNVASANKKRKIGSIAEGSRIQDSEKGEKSVSATNPSETLQGSHMDSGPSTLLPDKKLLLFILDRLQKCVFSAHLSVCFNSRKDIYGVFSEPVDPNELPDYHEIIEHPMDFGTVREKLTSGAYISLEQFEKDVLLISSNAMQYNAPDTIYFRQARTIQELAKKNFKNLRQDSDDNEPEPKVARRGRPPTKHLKKPLGRPSLERAGSEFSLDATLATGGENANRSNDLRKGFHHFEKTSLADFSGRFSFSSNSDAAAFNLFNQSRIDRSDDITGSGLRINSVRQGKRPIVSDENRRNTYQQFQAAAALLEPSVLNTFDRERKLLMPVGLFLEHAYARSLARFAADLGSVAWRVASKKIERSLPAGSGFGPGWVVENDTTPKRVFLPQAELCQMSTLQPYAADVKPLAPEQKGVRSSDNSEADTSSKTHDDEPSHAPSSDGHLSRPPTEFAATSSSLSSTQRSTEPCRGQAEAVEGLIPSSDYNVLESSIPTSRPSFQKQRQTPTIRPGMNGFNGTYAVDLSAHKGKLIGAFEPAGEQPHSSRTLETTTSRTNANFIHPATDSSTTNSSSSLLRSGNEAHSQGPSPAEKTTTIHHKPESVPPDVNARFKSPGSPSCSKVECGNPDLVLQL 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8836654 8842061 + CmaCh11G013330.1 Cma11g01333 303842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01333 762 MobiDBLite consensus disorder prediction 300 335 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 580 599 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 162 182 - -
Cma11g01333 762 Pfam Bromodomain 216 289 IPR001487 GO:0005515
Cma11g01333 762 MobiDBLite consensus disorder prediction 1 92 - -
Cma11g01333 762 CDD Bromodomain 189 297 - -
Cma11g01333 762 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 762 - -
Cma11g01333 762 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 762 - -
Cma11g01333 762 Gene3D - 157 316 IPR036427 GO:0005515
Cma11g01333 762 PRINTS Bromodomain signature 248 266 IPR001487 GO:0005515
Cma11g01333 762 PRINTS Bromodomain signature 266 285 IPR001487 GO:0005515
Cma11g01333 762 PRINTS Bromodomain signature 232 248 IPR001487 GO:0005515
Cma11g01333 762 PRINTS Bromodomain signature 218 231 IPR001487 GO:0005515
Cma11g01333 762 MobiDBLite consensus disorder prediction 17 48 - -
Cma11g01333 762 ProSiteProfiles Bromodomain profile. 215 285 IPR001487 GO:0005515
Cma11g01333 762 MobiDBLite consensus disorder prediction 554 570 - -
Cma11g01333 762 Coils Coil 17 42 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 687 762 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 137 161 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 111 183 - -
Cma11g01333 762 SUPERFAMILY Bromodomain 183 308 IPR036427 GO:0005515
Cma11g01333 762 MobiDBLite consensus disorder prediction 1 16 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 540 602 - -
Cma11g01333 762 SMART bromo_6 182 304 IPR001487 GO:0005515
Cma11g01333 762 MobiDBLite consensus disorder prediction 300 319 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 617 643 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 113 136 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 53 74 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 617 642 - -
Cma11g01333 762 MobiDBLite consensus disorder prediction 687 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01333 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1055.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01333 Cma19g00798 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02019 Cma-Chr1:12917873 Cma11g01333 Cma-Chr11:8836654 1.31E-79 dispersed
Cma07g00018 Cma-Chr7:113472 Cma11g01333 Cma-Chr11:8836654 1.58E-10 dispersed
Cma11g01333 Cma-Chr11:8836654 Cma03g01359 Cma-Chr3:8651171 9.12E-13 dispersed
Cma11g01333 Cma-Chr11:8836654 Cma19g00798 Cma-Chr19:7712954 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01333 Cma_Chr11 FPKM 9.4437 9.758333 8.742368 9.977539 13.318154 13.212221 13.115911 8.75613 8.061326 8.638208