Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01334 ATGGGGATATGTTGGGGTTCTCCTGTTGGTAATCATACCCCTAATACCACTGGACATCTCAGTTCAGTGGTATCCCAGACAACATCATCAACGGTCAGCAACATCTCGAAGAATAGTAATTTCTCGGTAGCAAGTGGAGATGAAGCTTTTCCAAATGGCCAGATTTTGCCCTCTCCAAACTTGAGAGAGTACAGTTTGGCAGAGCTCAAAGCTGCAACCAAAAACTTCAGAGCTGAGGCAATGCTTGGTGAAGGAGGTTTTGGCAAAGTTTACAAAGGTTGGCTCGAGGAGAAGGGCCATGGAAAGAAGGGAAATTCGATGGTTATTGCGGTCAAAAAGTTGAAATCTGATAGCTTGCAAGGAATTGAGGAGTGGCAGCTGCTGGGTTACTGTTGGGAGGATCACGAGCTACTCCTCACTTATGAGTTCATGCAAAAGGGAAGTTTGGAGAACCATCTCTTTGGAAGGGGCTCAGCAGTTACACCACTAGAGTGGGATACTCGGCTTAAGATCGCCATAGGTGCCGCTCGAGGGCTGGCGTTCTTGCACACATCGGACAAGCAAGTAATTTATAGAGATTTCAAGGCTTCTAATATTCTGCTTGATGGGTCTTATACACCAAAGCTATCAGACTTTGGTTTGGCAAAATTGGGTCCTTCTGAAAGTAAATCTCATTTGTCGACTCGAGTTATGGGCACTAATGGTTATGCTGCCCCGGAGTATATAACCACAGGACATCTGTATGTCAAGAGTGACGTGTATGGTTTTGGAGTTGTACTGATCGAGATGTTAACGGGTTTACGTGCACTCGACGAAAACCGTCCAACCGGTCACGAAAACTTGGTGGATTGGATAAAGCCATACCTATCAGAGAGGAGGAAGCTGAAAAACGTGATGGACTTTCGGTTGGAAGGAAAGTATCCATCGAGATCAGCATTCCAAGTGGCTCATCTTGCTCTACAATGTATTGAGCAAGAACAGAAGAACAGACCAGCAATGAATGAGGTTGTCGAGACACTGGAACAGATTGAAGCTATGAATGACCGACTGACTGAGCCTAGAAACCGTTCGCCCCGCCAGCCTCTTCACCATAGCTCTCCACTTCACGTGAAGCAATATGGAAGTCATGCTAATCAAACATCACCCAGTCCTTGA 1155 45.97 MGICWGSPVGNHTPNTTGHLSSVVSQTTSSTVSNISKNSNFSVASGDEAFPNGQILPSPNLREYSLAELKAATKNFRAEAMLGEGGFGKVYKGWLEEKGHGKKGNSMVIAVKKLKSDSLQGIEEWQLLGYCWEDHELLLTYEFMQKGSLENHLFGRGSAVTPLEWDTRLKIAIGAARGLAFLHTSDKQVIYRDFKASNILLDGSYTPKLSDFGLAKLGPSESKSHLSTRVMGTNGYAAPEYITTGHLYVKSDVYGFGVVLIEMLTGLRALDENRPTGHENLVDWIKPYLSERRKLKNVMDFRLEGKYPSRSAFQVAHLALQCIEQEQKNRPAMNEVVETLEQIEAMNDRLTEPRNRSPRQPLHHSSPLHVKQYGSHANQTSPSP 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8844329 8849713 + CmaCh11G013340.1 Cma11g01334 303843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01334 384 Gene3D Phosphorylase Kinase; domain 1 50 143 - -
Cma11g01334 384 ProSitePatterns Protein kinases ATP-binding region signature. 82 113 IPR017441 GO:0005524
Cma11g01334 384 SUPERFAMILY Protein kinase-like (PK-like) 60 368 IPR011009 -
Cma11g01334 384 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 21 356 - -
Cma11g01334 384 Gene3D Transferase(Phosphotransferase) domain 1 144 359 - -
Cma11g01334 384 ProSiteProfiles Protein kinase domain profile. 76 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01334 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cma11g01334 384 MobiDBLite consensus disorder prediction 348 384 - -
Cma11g01334 384 PANTHER OS01G0588500 PROTEIN-RELATED 21 356 - -
Cma11g01334 384 MobiDBLite consensus disorder prediction 1 21 - -
Cma11g01334 384 Pfam Protein tyrosine and serine/threonine kinase 79 340 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01334 - - - csv:101210490 670.233
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01334 Cma19g00797 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01334 Cma-Chr11:8844329 Cma16g01278 Cma-Chr16:9726797 5.62E-145 dispersed
Cma11g01334 Cma-Chr11:8844329 Cma19g00797 Cma-Chr19:7706257 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g292 . . . . . . . . . Cmo11g01785 . . . . . Cpe04g00630 . Bhi05g01584 . . . . . . Cla02g00348 . . . . . . Cone12ag1276 Cone8ag1330 Cone3ag1248 . . Csa07g00185 . Cme01g01148 . Blo13g00474 . . . . . Bma08g00718 . . . Cma11g01334 Cma19g00797 Car11g01412 . . . . . . . . . . . . . . . . . Lsi11g01284 . Chy01g00595 Cme11g01308
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004416 1 3 2 1 1 0 2 0 0 1 1 0 2 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68914 PF07714 PK_Tyr_Ser-Thr 2.70E-33 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01334 Cma_Chr11 FPKM 8.393405 9.374121 3.17672 3.795523 10.008147 11.328422 10.190607 0.782572 0.7026 0.435506