Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01337 ATGCGTAATAGGCCAAAGCAGACAATATCTATCGGCAGTGGGCTTGGGCTGTTACAAATGGGTCAGTGTTGGTTTTCTTTTTCGAGGTTGATTTTGCTGATCGATCTGCGTGTAAGGGATATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGAGGGCGGTGGCGATGGTGAAGAAGGTGGAGTTGGTGTTTCTGTCAATATTCGTTGCTCTAATGGTTCGAAATTTTCGGTGACGACGAGTCTTGATTCCACGGTTGGGACATTTAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGATTGATCTACAAGGGTCGCATCTTGAAGGACGATCAGACCTTAGTCAGTTATGGGTTACAGGCAGATCATACTATTCACCTGGTTCGTGGGTTTCCCCAAGGTTCGTCAGCACCTGCTTCTAATGATAATAATAGAAGTTCTGAGACTGCTCCCGGTGTTACAAGAGGTGTTGGTTCCACTGGGAGTGATGCTTTTGGAAATGCTGGCCTTGGTGCATCTTTGTTTCCTGGACTAGGTTTCAATTCTCTCGGTGGGGGTGGAGCTGGACTTCCTGAGTTTGAACAAGTGCAACAGCAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATCCAGAACTTGATGAATAATCCTGACATGATGCGGAGCTTAATTATGAGCAATCCTCAGATGAGGGATATTATTGACAGGAACCCCGAGCTTGCGCATATACTCAATGACCCTGGTATTCTTCGGCAGACATTAGAGGCTGCAAGGAATCCAGAACTCATGAGGGAGATGATGAGAAACACTGACAGAGCGATGAGTAACATCGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGGATGTATGAAAATGTTCAGGAGCCATTTCTGAATGCAACAACGATGGCTGGAAATGCTGGGAATGATTCGAGTTCAAACCCATTTGCAGCTCTCCTGGCAAACCAAGGGGGTGCACAAGCTAGGAACGAGTCTAATAATTCTTCTACTACAGGATCGGAAACAACCGAAAATGCTGCTCCGAATACGAATCCACTTCCTAATCCCTGGGGAGGAACTCAGACAACAACCACACAGCCTACTCCAGTAGGTGATGCAAGGCCTGGTATTGGGGGTTTAGGAGGGGCTGGTCGCACAAATGTGGAACGTTCTGTTGGTGGCACGCCGGATGTAGCTCAGTTGAATCAGTTTCTGCAGAACCCGGCTATTTCACAGATGATGCAGAGCCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGATACGGGGTATGGTTGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCCCGAGTTCGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCAATTCAGCAGTCACTTTTCTCGACCTTAAATCGACAGCCTTCATCTCAGAATTCTGCTCAATCGGGCACTGCTGCAGGTGTTCCTAACACTGCTGGATTGGAGATGTTGATGAGCCTGTTCGGTGGGCTTGGCGCCGGTGGGTTGGCTACTCCGAACAATCCAAACGTGCCCCCAGAAGAACTATATGCAACCCAACTTTCACAGCTCCAAGAGATGGGTTTCTTCGACACCCAAGAGAACATCAGAGCTCTACGTGCTACATCCGGGAACGTCCATGCTGCTGTCGAGCGACTGCTGGGAAATCTCGGGCAGTAA 1758 47.44 MRNRPKQTISIGSGLGLLQMGQCWFSFSRLILLIDLRVRDMGADGDSSEHRVEGGGDGEEGGVGVSVNIRCSNGSKFSVTTSLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHLVRGFPQGSSAPASNDNNRSSETAPGVTRGVGSTGSDAFGNAGLGASLFPGLGFNSLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDMMRSLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAALLANQGGAQARNESNNSSTTGSETTENAAPNTNPLPNPWGGTQTTTTQPTPVGDARPGIGGLGGAGRTNVERSVGGTPDVAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQIRGMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLFSTLNRQPSSQNSAQSGTAAGVPNTAGLEMLMSLFGGLGAGGLATPNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8859880 8865719 + CmaCh11G013370.1 Cma11g01337 303846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01337 585 Gene3D - 525 584 - -
Cma11g01337 585 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 41 585 - -
Cma11g01337 585 SUPERFAMILY Ubiquitin-like 65 153 IPR029071 -
Cma11g01337 585 SUPERFAMILY UBA-like 539 581 IPR009060 GO:0005515
Cma11g01337 585 MobiDBLite consensus disorder prediction 136 165 - -
Cma11g01337 585 MobiDBLite consensus disorder prediction 336 383 - -
Cma11g01337 585 Pfam UBA/TS-N domain 543 579 IPR015940 -
Cma11g01337 585 Gene3D - 234 292 - -
Cma11g01337 585 PRINTS Ubiquitin signature 96 116 IPR019956 -
Cma11g01337 585 PRINTS Ubiquitin signature 117 138 IPR019956 -
Cma11g01337 585 MobiDBLite consensus disorder prediction 140 162 - -
Cma11g01337 585 MobiDBLite consensus disorder prediction 336 397 - -
Cma11g01337 585 SMART uba_6 543 581 IPR015940 -
Cma11g01337 585 ProSiteProfiles Ubiquitin domain profile. 65 140 IPR000626 GO:0005515
Cma11g01337 585 SMART CBM 408 440 IPR006636 -
Cma11g01337 585 SMART CBM 444 479 IPR006636 -
Cma11g01337 585 SMART CBM 182 226 IPR006636 -
Cma11g01337 585 SMART CBM 239 278 IPR006636 -
Cma11g01337 585 CDD Ubl_Dsk2p_like 66 137 - -
Cma11g01337 585 PANTHER UBIQUILIN 41 585 - -
Cma11g01337 585 Pfam Ubiquitin family 67 134 IPR000626 GO:0005515
Cma11g01337 585 SMART ubq_7 65 136 IPR000626 GO:0005515
Cma11g01337 585 Gene3D - 64 149 - -
Cma11g01337 585 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 538 582 IPR015940 -
Cma11g01337 585 CDD UBA_PLICs 543 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01337 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 877.856
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01337 Cma-Chr11:8859880 Cma16g01271 Cma-Chr16:9682839 0 dispersed
Cma11g01337 Cma-Chr11:8859880 Cma19g00792 Cma-Chr19:7683142 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01154 . . . . Bpe15g00787 . . Bma08g00719 . . . Cma11g01337 . . . . . . . . . . . . . . . . . . . . . Chy01g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01337 Cma_Chr11 FPKM 39.946045 44.777626 29.812559 33.917713 33.675873 33.101944 33.445534 46.90044 45.841194 45.659985