Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01351 ATGCCCTTCTTCCTCCCTCTTCTCTTCCTCACCATTGTCTCCTCCGCCGCTGCCTGTGATCGTTGTCTTCATCAGGCCAAAGCCGCCTTCTACCAGGTCGAATCCGACGGTGAACTTAGAGGCGCCTGTGGCTATGGCAATCTCACCTCGGAGCTCTCAAATGGCCACTTCTCGGCTATCACGGCTACTCTTTACGGCCACGGCGCTGGCTGTGGCGCCTGCTTTCAAGTAAGGTGTAAAAATGAGGCACTTTGCAACAAAGAAGGCACCAAGATTGTTGTGACGGATGGCAATGAGAGCTCTCAAACAGACCTTGTAATTAGCAAGAAGGCTTTTAGTGAAATGGGTTTGAGTGGCAAAGAGGAATTGCTTATAATTGAAGGAGTTGTGGACGTTGAATTCAAAAGGGTTCCTTGTGAGTACAAAAACAAGAACTTGATGGTTAGAGTGGAAGAGATGAGCAAACCTCCCACTTATTTAGCCATGAAATTGCTTTACCAAGGTGGCCAAACCGAAATAGTAGGCATAGATATTGCTAAGGTGGGTGAATCGAATTGGAGTATGATGGCTCGGAACTATGGAGCTGTTTGGGACTCAAAACGTCCCATATCGGAAGGGCCATTGCAATTGCGGTTTGTGTTGACTTCTGGATTTGATGGAAAGTGGATCTGGTCGAAGTACGTGTTTCCTGTTGATTGGAGACCTGGACAGGTTTACGATACTGGAGTTCAAATTAATGACGTGGCGAAAGAGAATTGTCCAGATGATCAGTGTGCTGATAAGCATTGGGCGGGTCCAGTAGGTGCTTGA 810 47.41 MPFFLPLLFLTIVSSAAACDRCLHQAKAAFYQVESDGELRGACGYGNLTSELSNGHFSAITATLYGHGAGCGACFQVRCKNEALCNKEGTKIVVTDGNESSQTDLVISKKAFSEMGLSGKEELLIIEGVVDVEFKRVPCEYKNKNLMVRVEEMSKPPTYLAMKLLYQGGQTEIVGIDIAKVGESNWSMMARNYGAVWDSKRPISEGPLQLRFVLTSGFDGKWIWSKYVFPVDWRPGQVYDTGVQINDVAKENCPDDQCADKHWAGPVGA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8943977 8945421 - CmaCh11G013510.1 Cma11g01351 303860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01351 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cma11g01351 269 PANTHER EXPANSIN-LIKE A1-RELATED 4 260 - -
Cma11g01351 269 Pfam Lytic transglycolase 59 132 IPR009009 -
Cma11g01351 269 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cma11g01351 269 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cma11g01351 269 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cma11g01351 269 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cma11g01351 269 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cma11g01351 269 Gene3D - 141 246 IPR036749 -
Cma11g01351 269 PANTHER EXPANSIN-B3 4 260 - -
Cma11g01351 269 Gene3D - 11 140 IPR036908 -
Cma11g01351 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cma11g01351 269 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Cma11g01351 269 Pfam Expansin C-terminal domain 147 230 IPR007117 -
Cma11g01351 269 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01351 Cma-Chr11:8943977 Cma19g00781 Cma-Chr19:7619377 8.65E-137 dispersed
Cma11g01351 Cma-Chr11:8943977 Cma11g01352 Cma-Chr11:8947057 1.86E-40 tandem
Cma11g01351 Cma-Chr11:8943977 Cma19g00776 Cma-Chr19:7597168 5.35E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01351 - - cmax:111486501 559.681