Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01352 ATGGGTTTATTTCTTCCCCTTCTTCTCTTGTTCTTCCTCACCTCATCGGCGCTTGGCTGTGATCGCTGCCTTCACCACTCCAAAACTGCCTATATCTCAAATGATTCAACACTTTCATCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCGACGGACACCTCGCTGCTGGTGTGCCTTCCCTTTACAAAGAGGGCGTTCGTTGTGGTGCATGCTATCAGGTTGAATTAGTTTATAGGATAACATGTGAATACAAAAAACAAAATCTGTCAGTAAGAATTGAAGAGTCGAGCCAAAAGCCCCATCACATGGCTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTGGTTCACCTCCGTCCGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGACACCGGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCTGGTGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGTGACACCTTTTCTCCTCCTCCGCCGCCGCCTGTGATCGTTGTCTTCATCACGCCAGAGCTGCATTCTACCAGGTCGAGTCCGACGGTGAACGTAAAACTCCAATCCCCCTTTAAATTCTTCAACTTTTCCGATATTAAAGTCCGATCCGAGGTAAGGTGTAAAAACGAGGCAATGTGCAACAAAAAAGGCACCAAGATTGTTGTAACGGATGGCAATGAGAGCTCTCGAACAGCCCTTGTAATTAGCAAGAAGGCTTTTAGTGAAATGGCTTTGAGTGGCAAAGAAGAATTGCTTATTATTGAAGGAGTTGTGGACGTTGAATTCAAAAGGGTTCCTTGTGAGCACAAAAACAAGAACTTGATGGTTAGAGTGGAAGAGATGAGCAAATATCCCACTTATTTAGCCATCAAATTGCTTTACCAAGGTGGCCAAACCGAAATAGCAAGCATAGAGATCGCTAAGGTGGGTGATTCGAATTGGGCTCCGATGGCTCGCAACTATGGAGCTGTTTGGAACTCGAAACATCACGTACCGGAAGGACCATTGCAATTACGGTTTATGGTGACTTCTGGATTTGAGAAGAAGTGGATCGAGACAAAGTCTGTGCTTCCCGCTGATTGGAGACATGGACAAGTTTACGACACTGGAGTTCAAATCAACGATATAGCTAAAGAGAGTTGTTCAAATGATAAGTGTGCCGATGTGCATTGGGCTTAG 1344 47.17 MGLFLPLLLLFFLTSSALGCDRCLHHSKTAYISNDSTLSSGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQVELVYRITCEYKKQNLSVRIEESSQKPHHMAVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTTPEAAVVFQLRVISGFDGMWVTAELVVPADWKPGMIYDLGVQMDAIAKGQESCRKCDEGHCDTFSPPPPPPVIVVFITPELHSTRSSPTVNVKLQSPFKFFNFSDIKVRSEVRCKNEAMCNKKGTKIVVTDGNESSRTALVISKKAFSEMALSGKEELLIIEGVVDVEFKRVPCEHKNKNLMVRVEEMSKYPTYLAIKLLYQGGQTEIASIEIAKVGDSNWAPMARNYGAVWNSKHHVPEGPLQLRFMVTSGFEKKWIETKSVLPADWRHGQVYDTGVQINDIAKESCSNDKCADVHWA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8947057 8951703 - CmaCh11G013520.1 Cma11g01352 303861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01352 447 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 341 424 IPR007117 -
Cma11g01352 447 SUPERFAMILY PHL pollen allergen 327 423 IPR036749 -
Cma11g01352 447 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 104 187 IPR007117 -
Cma11g01352 447 PANTHER EXPANSIN-LIKE A1-RELATED 82 206 - -
Cma11g01352 447 PANTHER EXPANSIN-LIKE A1-RELATED 258 440 - -
Cma11g01352 447 PANTHER EXPANSIN-LIKE A1-RELATED 7 77 - -
Cma11g01352 447 SUPERFAMILY Barwin-like endoglucanases 8 79 IPR036908 -
Cma11g01352 447 Gene3D - 187 323 IPR036908 -
Cma11g01352 447 Pfam Expansin C-terminal domain 330 413 IPR007117 -
Cma11g01352 447 Pfam Expansin C-terminal domain 94 176 IPR007117 -
Cma11g01352 447 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 327 IPR007112 -
Cma11g01352 447 PANTHER EXPANSIN-B3 82 206 - -
Cma11g01352 447 PANTHER EXPANSIN-B3 258 440 - -
Cma11g01352 447 PANTHER EXPANSIN-B3 7 77 - -
Cma11g01352 447 Gene3D - 87 186 IPR036749 -
Cma11g01352 447 Gene3D - 324 429 IPR036749 -
Cma11g01352 447 SUPERFAMILY Barwin-like endoglucanases 259 325 IPR036908 -
Cma11g01352 447 SUPERFAMILY PHL pollen allergen 91 186 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01352 Cma-Chr11:8947057 Cma19g00780 Cma-Chr19:7610188 2.90E-121 dispersed
Cma11g01351 Cma-Chr11:8943977 Cma11g01352 Cma-Chr11:8947057 1.86E-40 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01352 - - cpep:111792494 357.451