Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01356 ATGGAACGAACCGATAAAGAAACGTTGTCGAAGAAGGAAGAAGAGGGGCAAGCCATCATCCAAATGTGGAAATACATATTTGGTTTCTCTGAAATGGCAGCCATAAAATGTGCCATAGAGCTTCAAATAGCTGATATCATTGAAGACCATGGCAGCCCCATGACATTGCCCCAACTCTCCTCCACTCTACACTGTTCTTCACCTCTCCTGCATCGAATCTTAAGATTCCTCGTCAGTCGAGGAATCTTCAAAGAATATTCCATATCCGACGACCTGATCGGCTATGCTCAGACCCCTCTATCGCGCTTGCTCGCCACCAAGAACGGCAGCAGCTTGGCCCCCTTGATGCTGCTGGAAGCCAGCCCGGCGATGCTTGCAGCATGGCACAACTTGAGCGCGTACGTCAAGAGTGGCGGCAGGTTCCCATTTGAGGCTGCGCATGGCATGGACGTGTGGCGCTATGCTGCGGCTAATCCAAAGCATAATAGGCTGATCAATGAGGCCATGGGGTGCTCTACGGGGCTGGTTGTGGCTGCTATACTTGATGGTTGTCAGGGGATCTTTGATGGGGTTGGGAGTTTGGTGGATGTGGGTGGAGGAAATGGAGCTACTTTGAGTGTTGTTGTTAAGGCTTGTTCGTGGATTCGAGGTATTAATTTCGATCTTCCTCATGTTATTTCTACGTCGCCTGTGTATGAACGTGTGGAGCATGTTGCTGGTGATATGTTTGATTTTGTTCCAAATGCTGATGCTGCTTTCATCAAGTGGACTCTACATGATTGGAACGACGAAGAGTGTATCACTATTTTGAAGAATTGTAAGGAGGCGATTCCGAAGAACACAGGTAAAGTGATCATTGTTGATGCAGTAATCGATGAAAAAGAAGAAACCGAGCAATCAGATGTTGGGTTGATGTTGGACTTGGTGATGATGGCTCATACCAACACTGGCAAAGAAAGAACACGTAAAGAATGGGCATATGTTATTAATGCAGTCGGTTTTAGTCGATTCACTGTTACATGCATTCAAGCTATCCAATCAGTTATCGAGTGCATCCCATAA 1062 46.7 MERTDKETLSKKEEEGQAIIQMWKYIFGFSEMAAIKCAIELQIADIIEDHGSPMTLPQLSSTLHCSSPLLHRILRFLVSRGIFKEYSISDDLIGYAQTPLSRLLATKNGSSLAPLMLLEASPAMLAAWHNLSAYVKSGGRFPFEAAHGMDVWRYAAANPKHNRLINEAMGCSTGLVVAAILDGCQGIFDGVGSLVDVGGGNGATLSVVVKACSWIRGINFDLPHVISTSPVYERVEHVAGDMFDFVPNADAAFIKWTLHDWNDEECITILKNCKEAIPKNTGKVIIVDAVIDEKEETEQSDVGLMLDLVMMAHTNTGKERTRKEWAYVINAVGFSRFTVTCIQAIQSVIECIP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8975412 8976894 + CmaCh11G013560.1 Cma11g01356 303865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01356 353 Gene3D - 4 104 IPR036388 -
Cma11g01356 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Cma11g01356 353 SUPERFAMILY Winged helix DNA-binding domain 13 108 IPR036390 -
Cma11g01356 353 Pfam Dimerisation domain 34 78 IPR012967 GO:0046983
Cma11g01356 353 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 9 345 - -
Cma11g01356 353 Gene3D Vaccinia Virus protein VP39 105 352 IPR029063 -
Cma11g01356 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 353 IPR016461 GO:0008168
Cma11g01356 353 Pfam O-methyltransferase domain 128 335 IPR001077 GO:0008171
Cma11g01356 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 351 IPR029063 -
Cma11g01356 353 PANTHER O-METHYLTRANSFERASE 9 345 IPR016461 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01356 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101222999 485.337
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01356 Cma19g00762 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01356 Cma-Chr11:8975412 Cma19g00763 Cma-Chr19:7554904 1.96E-158 dispersed
Cma02g00114 Cma-Chr2:571450 Cma11g01356 Cma-Chr11:8975412 1.93E-101 transposed
Cma06g00415 Cma-Chr6:1924548 Cma11g01356 Cma-Chr11:8975412 1.47E-45 transposed
Cma18g01342 Cma-Chr18:10209866 Cma11g01356 Cma-Chr11:8975412 7.86E-68 transposed
Cma11g01356 Cma-Chr11:8975412 Cma19g00761 Cma-Chr19:7542630 2.07E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01356 Cma_Chr11 FPKM 80.452919 86.69548 0.487225 0.852588 0.0 0.0 0.0 0.0 0.0 0.0