Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01358 ATGTGCTTATCCCTCTCAGACATCCACCTTCCTTTCAGACTCCATTTTTCGACCGCAAAGTTCACAGCGAACGAGAGTGGGAGAGCATCGACGATGGCATTTTCGATCATGGCGGCATCCTCTCTCAGAATGAATTTTGGAACAAAGGCTTCAATTCGATGCTCTTCATCTTCTTCTTCTTCAGCGGTTTCTTCTCAAGCTAAATCGATTCACTTTGATTTGAAAACATACTGGAAAAAGCTGATTCTCGAGATCAACCAGAAGCTGGATGAAGCTGTTCCCATTCAGTACCCCGACCAGATCTACGAGGCTATGCGTTACTCGGTTTTGGCTGAAGGAGCAAAGCGAGCTCCTCCGGTTATGTGCGTCGCCGCCTGCGAGCTTTTCGGCGTCGACCGCCTTGCTGCATTCCCTACCGCCTGTGCTCTCGAAATGGTTCATGCAGCTTCATTGATCCATGATGACCTTCCTTGCATGGATGACGATCCCTCGCGTCGCGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCAATTCTCGCTGGTGATGCACTTTTTCCCCTTGGCTTTCAACACATTGTCTCACACACACCATTCGACCTCGTTCCCGAGTCCCGCTTGCTCCGTGTGGTTGCCGAGATTGCCAAAGCCGTTGGTTCCAGAGGCATGGCAGCTGGACAGTTTCTTGACCTTGAGGGAGGCCCCAACTCCATAGAATTCGTCCAAGAAAAGAAATTTGGTGAAATGAGCCAATGCTCCGCTGTGTGCGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGGTACAGAGATTGAGAAGGTACGGAAGAGCGGTCGGCGTGTTGTATCAGGTAGTAGACGATATTCGGAAAGAACAAGCAAAGAAACTCGATCAAACCGATGAGAGTAAGAAGAGAAAAGGGAAGAGCTATGTTCGAGTATATGGGATTGAGAAGGCTAAGGAGGTGGCAGAGGAGCTGAGGACCAAAGCAAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGACCGAGTGATGCCTTTGTACAGCTTTGTGGATTATGCTGCTGATAGGAGTTTCAGTTTAGAAAGTTCAACTTGTCAACACGAACAGGACAGGATGATGTCGAAGAAATCACGGAATCCCGACCCAAGAGCTGGAGAAAAGTTCTCAGTAGATCGAGTTAGAGTGACGAAAATGGCGGACGAGAATGGCAGCGTGGAAAGCCTCGATCGCCTTCCTTCTGCTGTCCTTGCTACCATCATGACCAAGCTCGATTTGCCTTCTATCTGCTCCATTGCTTCCACCTGCACGACCTTCCATTCCTGTGCTTCACAACTTCACAATTTTCTCCCTAGTTTCCATCTCCTTGAAATTTCTCCAACGGTGGAATTTCTGAGGCCTCTGCTGCCTCCAAACCCTTTCCTAAGGAGCTTAAAGGTAGATTGTGGTCAGCTTGATGATTCAGCTATCCAGCTCCTGCTGAAGCCTTCCTTGCACGAACTATATCTGCATAATTGCGCTGATTTCAGTGGGAAATTGCTGTCTGAGATCGGAGGGTGTTGCAAGGATTTAAGGTCCCTCTATTTGAGTTCAGTTGCTGAAAAAAGAGGTCGGGCAATTCATATTGCGGATCTAGAAGAGTTACTAAGTGGTTGCACACGGTTGGAAGCATTAACCCTGATGTTTGATGTCTCATTTTTCCTTCGTCAAAACTTTGCTCGAGTCTGGGCTATGGCTTCAGAAAAACTAACTTCTCTCGAGATTGGCTGTATTTATTCGGTTACAATCACCGAACTGCTTAGCCAAAATCTGGTGGACTACATAACTGATGCCATGGTTGGTGCAATATCAAAAGGTCTTGTCTCCTTGACTCATTTGGAACTACAAGATGCTCCAATTATTGAACCAAGATTTTCTTTTGACCTGACCAACGTTGGCCTTCAACAAATCAAACATCTTTCAAAATTGAAGCATCTCTCTTTGGTGCGAAGTCAGGAATTTTTTGTAACTTATTTTAGAAGAGTAAATGATTTGGGGATCCTCTTAATGGCCGATGGATGCGCTGACCTGGAAAGTATCTGTCTCGGAGGCTTTTGTCGTGTTACAGACACTGGGTTCAGGACACTTCTGCATACATTCTCCAATTTAAACAAGCTTAGGGTGTTCCATGGAATTCAATTAACCCATCTAGTTTTTCACGACATCTCTGCTACTTCACTTTCCTTGAAGCATGTTAGCTTAAGATGGTGCAGTCTCCTAACGAACGATGCCGTAAAAAATTTGTCATTGAACAAGGATCTAAGTTTTCTTGATTTGAGAGATTGCAGAAGCCTTCGGGATGAAGCGCTTCAAGCTATCAGTACTATTCCAAAACTGAAGACGTTGCTTTTGGACGGGTCCGATATTAGTGATGCAGGATTGTCTCACTTAAAACCCATGATTATGAGCTCGTTAGTTTCCTTGTCTGTTAGAGGTTGCAAGAAGCTTACAGATAAATCCATCACTGTTCTATTTGATGGCTTATCCAAGATAGAACTGCAAGAATTAGATCTATCCAACCTTCCTTACCTGTCTGATGCTGCAGTTTTACAACTGACCAGAAGCAGGATTGCGATATCCGAACTCCGAATGCGTCAATGCCCTCTCATCGGCGATATCTCGGTCATGGCATTAGCCTCAATGCAAGCTAATGAAGACCAACGACATGGTAGTAGCCTCCGGTTGTTGGATTTGTACAACTGTGGTGGCCTTACACAGCTCTCATTCAAATGGTTAAAAAACCCATACTTTCCAAGGTTGAGGTGGTTGGGTGTTACAGGTAGTCTAAATCGCGACTTGGTAGACGCGTTAGCCAGAAGTAGACCGTTCTTGCACGTAGCATGCCATGGCGAGGAGTTGGGAGCCGATCATTGGGATAACTCCGACATTCTCTATATGCACCACTACGACGAGGTGGATGAATTTGAACAGTGGCTCTTTGATGGTGAGGTCGAGGACGACGAAGACGACGACATGGCTGATGCTGAAAATGATGGAGAGCTAATCCTATGA 3057 45.89 MCLSLSDIHLPFRLHFSTAKFTANESGRASTMAFSIMAASSLRMNFGTKASIRCSSSSSSSAVSSQAKSIHFDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVRVYGIEKAKEVAEELRTKAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESSTCQHEQDRMMSKKSRNPDPRAGEKFSVDRVRVTKMADENGSVESLDRLPSAVLATIMTKLDLPSICSIASTCTTFHSCASQLHNFLPSFHLLEISPTVEFLRPLLPPNPFLRSLKVDCGQLDDSAIQLLLKPSLHELYLHNCADFSGKLLSEIGGCCKDLRSLYLSSVAEKRGRAIHIADLEELLSGCTRLEALTLMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTITELLSQNLVDYITDAMVGAISKGLVSLTHLELQDAPIIEPRFSFDLTNVGLQQIKHLSKLKHLSLVRSQEFFVTYFRRVNDLGILLMADGCADLESICLGGFCRVTDTGFRTLLHTFSNLNKLRVFHGIQLTHLVFHDISATSLSLKHVSLRWCSLLTNDAVKNLSLNKDLSFLDLRDCRSLRDEALQAISTIPKLKTLLLDGSDISDAGLSHLKPMIMSSLVSLSVRGCKKLTDKSITVLFDGLSKIELQELDLSNLPYLSDAAVLQLTRSRIAISELRMRQCPLIGDISVMALASMQANEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRLRWLGVTGSLNRDLVDALARSRPFLHVACHGEELGADHWDNSDILYMHHYDEVDEFEQWLFDGEVEDDEDDDMADAENDGELIL 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8981074 8988805 + CmaCh11G013580.1 Cma11g01358 303867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01358 1018 ProSiteProfiles F-box domain profile. 408 455 IPR001810 GO:0005515
Cma11g01358 1018 ProSitePatterns Polyprenyl synthases signature 1. 151 167 IPR033749 -
Cma11g01358 1018 SUPERFAMILY Terpenoid synthases 75 340 IPR008949 -
Cma11g01358 1018 Gene3D Ribonuclease Inhibitor 670 813 IPR032675 -
Cma11g01358 1018 Gene3D Farnesyl Diphosphate Synthase 71 370 IPR008949 -
Cma11g01358 1018 MobiDBLite consensus disorder prediction 371 388 - -
Cma11g01358 1018 Coils Coil 318 338 - -
Cma11g01358 1018 Pfam Polyprenyl synthetase 100 291 IPR000092 GO:0008299
Cma11g01358 1018 Gene3D Ribonuclease Inhibitor 814 903 IPR032675 -
Cma11g01358 1018 Gene3D Ribonuclease Inhibitor 403 667 IPR032675 -
Cma11g01358 1018 SFLD Isoprenoid Synthase Type I 102 343 - -
Cma11g01358 1018 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 43 363 - -
Cma11g01358 1018 SUPERFAMILY F-box domain 403 447 IPR036047 GO:0005515
Cma11g01358 1018 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC 43 363 - -
Cma11g01358 1018 Pfam F-box domain 411 446 IPR001810 GO:0005515
Cma11g01358 1018 MobiDBLite consensus disorder prediction 367 388 - -
Cma11g01358 1018 SUPERFAMILY RNI-like 566 981 - -
Cma11g01358 1018 CDD Trans_IPPS_HT 98 359 IPR000092 GO:0008299
Cma11g01358 1018 SMART LRR_CC_2 817 842 IPR006553 -
Cma11g01358 1018 SMART LRR_CC_2 741 766 IPR006553 -
Cma11g01358 1018 SMART LRR_CC_2 871 896 IPR006553 -
Cma11g01358 1018 SMART LRR_CC_2 767 791 IPR006553 -
Cma11g01358 1018 SMART LRR_CC_2 845 870 IPR006553 -
Cma11g01358 1018 SMART LRR_CC_2 689 714 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01358 - - - csv:101213291 1091.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00957 Cma-Chr9:4818898 Cma11g01358 Cma-Chr11:8981074 1.67E-29 dispersed
Cma09g01048 Cma-Chr9:5462167 Cma11g01358 Cma-Chr11:8981074 1.12E-70 dispersed
Cma11g01358 Cma-Chr11:8981074 Cma05g00382 Cma-Chr5:1680166 1.43E-15 dispersed
Cma11g01358 Cma-Chr11:8981074 Cma20g01116 Cma-Chr20:8807535 5.88E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01358 Cma_Chr11 FPKM 12.147908 12.706991 18.750114 18.515903 22.298254 24.995703 22.544237 15.571279 14.050089 13.633947