Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01359 | ATGGTTATGGAGGATAACGAGAGCTGTGGAAGTAGAGCGTACGGCTCCTTGTCGCCGGCGCAGTCTCGGCAACAGAGGCAGAAGTTTGAGGTCTACAATGAAGTTCTTCGCCGTCTGAAGGATTCCGTCAACGAGGAGACGCTTCAGCCTGGTTTCGATGACGAACTATGGCTTCACTTTAATCGCCTTCCTACTCGATATGCTCTCGATGTAAATGTGGAGAGAGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATGTGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTTCGCCTGGTGCAGGTCCAAGCCATTTCTGATGGGAATTCAGCTGATTTTGCTGATTCCTGTCCTGTAAAAGACACAGATCATAATTCTTCAAATTTACCGAGCAAGCAGAGCATACATCCACCACCTGCCTTTGGGTCATCTCCCAACCTCGAAGCCCTCGCCCTTGAAGCTAATAACGCTCAGGATCAGGAGGTTGATCATTCCATACATGCCAAAACACAATCTTTCCGGCCAATGCATGAAATAACTTTCTCTACGGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGTCTGAACATCCAGGAGGCACATGCATTTTCCACTGTTGATGGTTACTCCTTGGACGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAACGATTGAAGGCTGCGATAGAGAAGGAAATCATACAGAGGAAGGCTTGGCCAAATCATAAATCCTTTTCAATAAGGGAACGGGATATATCAATTAAACCTGATCCTGATCGTGTGGAAATTCCCACGGATGGGACTGATGTATGGGAAATTAATCCTAGACATCTGAAGTTCGAGCATAAAGTTGCATCTGGGTCATATGGAGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTCGCTATTAAAGTCCTTAAACCTGAACGCGTAGATTCAGATATGCAAAGTGAGTTTGCCCAGGAGGTGTACATTATGAGAAAAGTCAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGTACTAAACCTCCAAGCTTGTGCATAGTAACAGAGTTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGCACTTTTAGGCTTCCATCCTTGCTCAAGGTAGCCATTGATGTTTCTAAGGGAATGAACTACTTGCACCAAAATAATATCATTCACAGAGATCTCAAGGCCGCCAATCTTTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTCGGCGTCGCCAGAGTGAAAGCTCAATCAGGAGTCATGACTGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGCAATTGTCTTGTGGGAGCTGCTTACTGGAAAGCTACCCTATGAATTCCTAACCCCATTACAAGCTGCAGTCGGAGTGGTACAAAAGGGTTTACGGCCTATTATTCCAAAGCACACTAATCCGAAGCTGGCTGAGTTGCTGGAAAAATGCTGGCAACAAGACCCCTCATGTAGGCCTGACTTCTCTGAAATTATCGACATATTGTTGCAGATAACTAAGGAAGTTGCAGAAGATGGCGACGAACGACGAAAGGAGAAGAGTGGAGGATTACTTTCTGTGTTGAGACGAAACCATCAATGA | 1713 | 44.48 | MVMEDNESCGSRAYGSLSPAQSRQQRQKFEVYNEVLRRLKDSVNEETLQPGFDDELWLHFNRLPTRYALDVNVERAEDVLMHKRLLQCAHDPANRPAIEVRLVQVQAISDGNSADFADSCPVKDTDHNSSNLPSKQSIHPPPAFGSSPNLEALALEANNAQDQEVDHSIHAKTQSFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKAAIEKEIIQRKAWPNHKSFSIRERDISIKPDPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKPERVDSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFAIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPIIPKHTNPKLAELLEKCWQQDPSCRPDFSEIIDILLQITKEVAEDGDERRKEKSGGLLSVLRRNHQ | 570 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8997615 | 9004647 | + | CmaCh11G013590.1 | Cma11g01359 | 303868 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01359 | 570 | MobiDBLite | consensus disorder prediction | 549 | 570 | - | - | |
Cma11g01359 | 570 | MobiDBLite | consensus disorder prediction | 114 | 147 | - | - | |
Cma11g01359 | 570 | CDD | STKc_MAP3K-like | 296 | 539 | - | - | |
Cma11g01359 | 570 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 18 | 552 | - | - | |
Cma11g01359 | 570 | ProSiteProfiles | ACT domain profile. | 181 | 251 | IPR002912 | - | |
Cma11g01359 | 570 | PRINTS | Tyrosine kinase catalytic domain signature | 364 | 377 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01359 | 570 | PRINTS | Tyrosine kinase catalytic domain signature | 401 | 419 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01359 | 570 | PRINTS | Tyrosine kinase catalytic domain signature | 447 | 457 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01359 | 570 | PRINTS | Tyrosine kinase catalytic domain signature | 466 | 488 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01359 | 570 | PRINTS | Tyrosine kinase catalytic domain signature | 510 | 532 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01359 | 570 | SUPERFAMILY | Protein kinase-like (PK-like) | 269 | 539 | IPR011009 | - | |
Cma11g01359 | 570 | CDD | ACT_TyrKc | 179 | 245 | - | - | |
Cma11g01359 | 570 | ProSiteProfiles | Protein kinase domain profile. | 290 | 540 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01359 | 570 | SMART | serkin_6 | 290 | 540 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01359 | 570 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 | 18 | 552 | - | - | |
Cma11g01359 | 570 | Pfam | Protein tyrosine and serine/threonine kinase | 290 | 538 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01359 | 570 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma11g01359 | 570 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 407 | 419 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01359 | 570 | MobiDBLite | consensus disorder prediction | 123 | 143 | - | - | |
Cma11g01359 | 570 | Gene3D | Phosphorylase Kinase; domain 1 | 280 | 368 | - | - | |
Cma11g01359 | 570 | Gene3D | Transferase(Phosphotransferase) domain 1 | 369 | 564 | - | - | |
Cma11g01359 | 570 | SUPERFAMILY | ACT-like | 179 | 243 | IPR045865 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01359 | Cma19g00758 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01992 | Cma-Chr1:12796667 | Cma11g01359 | Cma-Chr11:8997615 | 0 | dispersed | |
Cma11g01359 | Cma-Chr11:8997615 | Cma16g01259 | Cma-Chr16:9497182 | 0 | dispersed | |
Cma11g01359 | Cma-Chr11:8997615 | Cma19g00758 | Cma-Chr19:7517998 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68915 | PF07714 | PK_Tyr_Ser-Thr | 1.90E-73 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01359 | - | - | csv:101213048 | 1033.48 |