Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01359 ATGGTTATGGAGGATAACGAGAGCTGTGGAAGTAGAGCGTACGGCTCCTTGTCGCCGGCGCAGTCTCGGCAACAGAGGCAGAAGTTTGAGGTCTACAATGAAGTTCTTCGCCGTCTGAAGGATTCCGTCAACGAGGAGACGCTTCAGCCTGGTTTCGATGACGAACTATGGCTTCACTTTAATCGCCTTCCTACTCGATATGCTCTCGATGTAAATGTGGAGAGAGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATGTGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTTCGCCTGGTGCAGGTCCAAGCCATTTCTGATGGGAATTCAGCTGATTTTGCTGATTCCTGTCCTGTAAAAGACACAGATCATAATTCTTCAAATTTACCGAGCAAGCAGAGCATACATCCACCACCTGCCTTTGGGTCATCTCCCAACCTCGAAGCCCTCGCCCTTGAAGCTAATAACGCTCAGGATCAGGAGGTTGATCATTCCATACATGCCAAAACACAATCTTTCCGGCCAATGCATGAAATAACTTTCTCTACGGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGTCTGAACATCCAGGAGGCACATGCATTTTCCACTGTTGATGGTTACTCCTTGGACGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAACGATTGAAGGCTGCGATAGAGAAGGAAATCATACAGAGGAAGGCTTGGCCAAATCATAAATCCTTTTCAATAAGGGAACGGGATATATCAATTAAACCTGATCCTGATCGTGTGGAAATTCCCACGGATGGGACTGATGTATGGGAAATTAATCCTAGACATCTGAAGTTCGAGCATAAAGTTGCATCTGGGTCATATGGAGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTCGCTATTAAAGTCCTTAAACCTGAACGCGTAGATTCAGATATGCAAAGTGAGTTTGCCCAGGAGGTGTACATTATGAGAAAAGTCAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGTACTAAACCTCCAAGCTTGTGCATAGTAACAGAGTTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGCACTTTTAGGCTTCCATCCTTGCTCAAGGTAGCCATTGATGTTTCTAAGGGAATGAACTACTTGCACCAAAATAATATCATTCACAGAGATCTCAAGGCCGCCAATCTTTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTCGGCGTCGCCAGAGTGAAAGCTCAATCAGGAGTCATGACTGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGCAATTGTCTTGTGGGAGCTGCTTACTGGAAAGCTACCCTATGAATTCCTAACCCCATTACAAGCTGCAGTCGGAGTGGTACAAAAGGGTTTACGGCCTATTATTCCAAAGCACACTAATCCGAAGCTGGCTGAGTTGCTGGAAAAATGCTGGCAACAAGACCCCTCATGTAGGCCTGACTTCTCTGAAATTATCGACATATTGTTGCAGATAACTAAGGAAGTTGCAGAAGATGGCGACGAACGACGAAAGGAGAAGAGTGGAGGATTACTTTCTGTGTTGAGACGAAACCATCAATGA 1713 44.48 MVMEDNESCGSRAYGSLSPAQSRQQRQKFEVYNEVLRRLKDSVNEETLQPGFDDELWLHFNRLPTRYALDVNVERAEDVLMHKRLLQCAHDPANRPAIEVRLVQVQAISDGNSADFADSCPVKDTDHNSSNLPSKQSIHPPPAFGSSPNLEALALEANNAQDQEVDHSIHAKTQSFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKAAIEKEIIQRKAWPNHKSFSIRERDISIKPDPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKPERVDSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFAIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPIIPKHTNPKLAELLEKCWQQDPSCRPDFSEIIDILLQITKEVAEDGDERRKEKSGGLLSVLRRNHQ 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8997615 9004647 + CmaCh11G013590.1 Cma11g01359 303868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01359 570 MobiDBLite consensus disorder prediction 549 570 - -
Cma11g01359 570 MobiDBLite consensus disorder prediction 114 147 - -
Cma11g01359 570 CDD STKc_MAP3K-like 296 539 - -
Cma11g01359 570 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 18 552 - -
Cma11g01359 570 ProSiteProfiles ACT domain profile. 181 251 IPR002912 -
Cma11g01359 570 PRINTS Tyrosine kinase catalytic domain signature 364 377 IPR001245 GO:0004672|GO:0006468
Cma11g01359 570 PRINTS Tyrosine kinase catalytic domain signature 401 419 IPR001245 GO:0004672|GO:0006468
Cma11g01359 570 PRINTS Tyrosine kinase catalytic domain signature 447 457 IPR001245 GO:0004672|GO:0006468
Cma11g01359 570 PRINTS Tyrosine kinase catalytic domain signature 466 488 IPR001245 GO:0004672|GO:0006468
Cma11g01359 570 PRINTS Tyrosine kinase catalytic domain signature 510 532 IPR001245 GO:0004672|GO:0006468
Cma11g01359 570 SUPERFAMILY Protein kinase-like (PK-like) 269 539 IPR011009 -
Cma11g01359 570 CDD ACT_TyrKc 179 245 - -
Cma11g01359 570 ProSiteProfiles Protein kinase domain profile. 290 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01359 570 SMART serkin_6 290 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01359 570 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 18 552 - -
Cma11g01359 570 Pfam Protein tyrosine and serine/threonine kinase 290 538 IPR001245 GO:0004672|GO:0006468
Cma11g01359 570 MobiDBLite consensus disorder prediction 1 21 - -
Cma11g01359 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Cma11g01359 570 MobiDBLite consensus disorder prediction 123 143 - -
Cma11g01359 570 Gene3D Phosphorylase Kinase; domain 1 280 368 - -
Cma11g01359 570 Gene3D Transferase(Phosphotransferase) domain 1 369 564 - -
Cma11g01359 570 SUPERFAMILY ACT-like 179 243 IPR045865 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01359 Cma19g00758 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01992 Cma-Chr1:12796667 Cma11g01359 Cma-Chr11:8997615 0 dispersed
Cma11g01359 Cma-Chr11:8997615 Cma16g01259 Cma-Chr16:9497182 0 dispersed
Cma11g01359 Cma-Chr11:8997615 Cma19g00758 Cma-Chr19:7517998 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68915 PF07714 PK_Tyr_Ser-Thr 1.90E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01359 - - csv:101213048 1033.48