Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01360 ATGGATTCCTTCAAGAAATCTCTCAAACCCAATGGACCTTTCAAGCATTCCAGGAAGATTTCTGCCGGCGGAGCTGGAAGCGAAATCAATCAGGAGGAGCTCCCCATTCTTCTCGATCACCAACCCTCTGATCAGCATAATCGCCTTAAGGTTCGTCGACCAGCCAACGACGGCGAACCTTCTGGACACAGTGACGTCATTCTCAAGGTTGATGATGGCGGTTCTTCGGCTGTCTCAAGATCACAGGAGTCTGCCGGCTATGGCGGGAAGGTTTGGCGGGAATCTAGGTATGACTTCTGGAGTAATAATGATGGAATTGGAACTGGAGGAAGTGCGAGTTGGGCCAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTGAGGCGTGGGAATGGTACGGATGATCCGCCGACGAAGCTGATTGGTGATTTTCTTCTTAAGCAGAAAGTTAGAGGCGAAACGACTTTGGATTTGGATCTGGAAATGGAGGAGTTGCGGCTGGATAGGACTAAAACTCCGATGATGGACTCGCCGTTGAGTCGGGCTTCGAAGGATCTTAAAGTTTCGTTTCAACATGACTCGACTGAAATATCGAGCAATGAATCGGTTCGACGGCGGTATAAAGAGTTCCGTGAAATGCAAGAAGAGAGCAAAAGAGGTCAGCCGTCATGGCATCAATCGCACCATGAACATCGCGGATCTTCCATCTCTGGTGTTCAGAACGACTCTGTTGCTGAAGCTATGAGAAGCGCATCTAACTTGTCTTTTCAGAGCACTCTTTCGTTGCATAGGAAATCTCATTTGCTGAAGGCTAAAGGCAAGTCGAGATTGACAGATCCGCCGGCAGAACCAGACCGGCTCTCCGGCCTCGTTAATAAATCGGGACAGCTCCGATCAGGGTTTCTCGGCAGGACTGACGATGAGGAGGACGACCCTTTTCTGGAGGAGGATTTTCCAGACGATTTCAGAAGGGGTAAGCTCGATGCTCTAACTGTGCTTCAATGGATCAGTTTGTTTCTAATCACTGCTGCTTTAGTTTGCACACTTTCTATTCGTCATTTGAGAGAAAATAGCTTATGGGAATTTAGTATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGGCGATTGGTATCTGGTTGGGGGATTGGGATTGGAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAGAAGGTTCTGTATTTCGTTTATGGGGTTAAGAGGCCGGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTAATCGCTTGGCATTTGTTGTTTGATAAGCGGGTTAAGAATCAAACCAACAGCGATATACTCGATTATGTCAGGAAAAGTTTAGTGTGTCTCTTGTTAGGCACATTGATTTGGCTAGCTAAGACCCTGATGGTGAAGGTGCTTGCATCTTCCTTCCATGTGAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATTGAGACGCTTTCGGGGCCACCACGGATTGAGCTTCAGAAGAGTGAGGAAGAACAGAAGAAAATTGCAGATGAAGTTCAAAGATTACAGAGTGCAGGAGTTCCCGTACCCCCAGATCTAAGGGCAGCAGCTTTATCTTCTATAAAGAGTGGTGAAAGGGTAAGAAGCAATGTGGGGAGCCAGAGAAGTTTGCGTGGAAAAGATCCCAAACTCTCAAGGGTATCTACCAAAAATGGAAGTGAAGGGATAAATATTGACCATTTGCACAAGCTAACTTCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGCTGAAAATAGTTAGATATGGAAGTATTACCACACTGGATGAGCAGATACAGGGGCCGTCTCTTGATGATGAATCTACTACTACCGAGATCAAAAGTGAACGCGAGGCAAGGGCTGCTGCTAAGAAGATTTTTCAGAACGTGGCTCGGCCCAGGTTCAAGTACATATACCTGGACGACTTAATGCGGTTCATGAAAGAAGAAGAGGTTCTTAAAACACTTAGTCGCTTTGAGGGAGCAACTGAGAGCCGGAGGATAAGCAAGTCTGCCTTGAATAATTGGGTGGTCAATGCCTTCAGAGAACGTAGAGCCCTTTCTTTAACACTGAATGATACCAAAACAGCTGTTGATAGACTTCGCCTTGTGGTGAATGTCATATTCAGCATCTTTATATTAGTTTTATGGATTATATTACTAGGAATTGCCTCCAGAAAAGTCATCCTCTACATTAGTTCTCAAATAGTGCTTGCGGCATTCATTTTTGGGAACACTCTAAAGAACATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCGTTCGACGTCGGAGATCGATGTGAAATCGATGATATTCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTGTTCTTGAGACACGACAACCTGAAGATTATTGTCCCAAATAGTGTTCTTGCAACCAAAGTGATCCACAACCACTACCGTAGTCCCGACATGGGCGAATTTATTCAAATCTGTGTCCATATAATGACGCCACTTGAGAAAATTACGGCCATGAAACAGAGAATCATAAGTTTCATTGAAGCCGACAAAGAACACTGGTGTCCTTCCCCAATTATTTTGATGAAGGATATAGATAGTGCAGACAAATTGGCCATGTCAATTTGGCTGTCACACACAATGAACCACCAAGACATAAGGGAAAGATGGGCTCGGAGATCCGTCGTGGTCGAAGAGGTATTGAAGATCTGTCAAGAGTTCGACATTACACCGACTCTCGTCCCACCACCGTGA 2805 44.74 MDSFKKSLKPNGPFKHSRKISAGGAGSEINQEELPILLDHQPSDQHNRLKVRRPANDGEPSGHSDVILKVDDGGSSAVSRSQESAGYGGKVWRESRYDFWSNNDGIGTGGSASWASGARASDSGDRNEGFEFVRRGNGTDDPPTKLIGDFLLKQKVRGETTLDLDLEMEELRLDRTKTPMMDSPLSRASKDLKVSFQHDSTEISSNESVRRRYKEFREMQEESKRGQPSWHQSHHEHRGSSISGVQNDSVAEAMRSASNLSFQSTLSLHRKSHLLKAKGKSRLTDPPAEPDRLSGLVNKSGQLRSGFLGRTDDEEDDPFLEEDFPDDFRRGKLDALTVLQWISLFLITAALVCTLSIRHLRENSLWEFSIWKWEVMVLVLICGRLVSGWGIGIGVFFIERNFLLRKKVLYFVYGVKRPVQNCLWLGLVLIAWHLLFDKRVKNQTNSDILDYVRKSLVCLLLGTLIWLAKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPRIELQKSEEEQKKIADEVQRLQSAGVPVPPDLRAAALSSIKSGERVRSNVGSQRSLRGKDPKLSRVSTKNGSEGINIDHLHKLTSKNVSAWNMKRLLKIVRYGSITTLDEQIQGPSLDDESTTTEIKSEREARAAAKKIFQNVARPRFKYIYLDDLMRFMKEEEVLKTLSRFEGATESRRISKSALNNWVVNAFRERRALSLTLNDTKTAVDRLRLVVNVIFSIFILVLWIILLGIASRKVILYISSQIVLAAFIFGNTLKNIFEAIIFLFVMHPFDVGDRCEIDDIQMVVEEMNILTTVFLRHDNLKIIVPNSVLATKVIHNHYRSPDMGEFIQICVHIMTPLEKITAMKQRIISFIEADKEHWCPSPIILMKDIDSADKLAMSIWLSHTMNHQDIRERWARRSVVVEEVLKICQEFDITPTLVPPP 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9005791 9010204 + CmaCh11G013600.1 Cma11g01360 303869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01360 934 Gene3D - 781 830 IPR023408 -
Cma11g01360 934 MobiDBLite consensus disorder prediction 196 243 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 43 59 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 277 297 - -
Cma11g01360 934 Pfam Mechanosensitive ion channel 724 926 IPR006685 GO:0016020|GO:0055085
Cma11g01360 934 SUPERFAMILY Sm-like ribonucleoproteins 770 830 IPR010920 -
Cma11g01360 934 MobiDBLite consensus disorder prediction 550 577 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 1 87 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 204 238 - -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 109 932 IPR016688 -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 100 IPR016688 -
Cma11g01360 934 MobiDBLite consensus disorder prediction 110 141 - -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 109 932 - -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 100 - -
Cma11g01360 934 Coils Coil 510 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01360 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101207426 1288.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00081 Cma-Chr9:355518 Cma11g01360 Cma-Chr11:9005791 0 dispersed
Cma11g01360 Cma-Chr11:9005791 Cma17g00069 Cma-Chr17:327028 7.72E-157 dispersed
Cma11g01360 Cma-Chr11:9005791 Cma20g00732 Cma-Chr20:3410359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00875 . 144 504 Mechanosensitive Ion Channel Family AT4G00290 64.8 9.3e-139 491.1
Cma16g00747 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 58.6 2.3e-196 682.9
Cma05g00546 . 10 704 Mechanosensitive Ion Channel Family AT5G10490 55.5 8.3e-191 664.5
Cma12g00199 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 57.4 1.2e-189 660.6
Cma05g00546 . 10 684 Mechanosensitive Ion Channel Family AT1G58200 57.4 1.8e-201 699.9
Cma12g00199 . 10 502 Mechanosensitive Ion Channel Family AT1G58200 67.6 6.4e-191 664.8
Cma16g00747 . 6 710 Mechanosensitive Ion Channel Family AT1G58200 50.4 7.6e-176 614.8
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 55.6 1.3e-263 906.7
Cma20g00732 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 53.1 1.6e-247 853.2
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.8 2.6e-282 968.8
Cma11g01360 . 65 932 Mechanosensitive Ion Channel Family AT1G78610 52.0 5.9e-234 808.1
Cma20g00732 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.7 8.4e-233 804.3
Cma11g01360 . 270 926 Mechanosensitive Ion Channel Family AT2G17000 56.6 5.9e-202 701.8
Cma10g00752 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.4 2.8e-200 696.0
Cma01g01705 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 50.2 2.3e-165 580.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01360 Cma_Chr11 FPKM 0.367914 0.428011 0.52361 0.18661 0.134287 0.194618 0.119368 0.366765 0.200191 0.204574