Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01360 ATGGATTCCTTCAAGAAATCTCTCAAACCCAATGGACCTTTCAAGCATTCCAGGAAGATTTCTGCCGGCGGAGCTGGAAGCGAAATCAATCAGGAGGAGCTCCCCATTCTTCTCGATCACCAACCCTCTGATCAGCATAATCGCCTTAAGGTTCGTCGACCAGCCAACGACGGCGAACCTTCTGGACACAGTGACGTCATTCTCAAGGTTGATGATGGCGGTTCTTCGGCTGTCTCAAGATCACAGGAGTCTGCCGGCTATGGCGGGAAGGTTTGGCGGGAATCTAGGTATGACTTCTGGAGTAATAATGATGGAATTGGAACTGGAGGAAGTGCGAGTTGGGCCAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTGAGGCGTGGGAATGGTACGGATGATCCGCCGACGAAGCTGATTGGTGATTTTCTTCTTAAGCAGAAAGTTAGAGGCGAAACGACTTTGGATTTGGATCTGGAAATGGAGGAGTTGCGGCTGGATAGGACTAAAACTCCGATGATGGACTCGCCGTTGAGTCGGGCTTCGAAGGATCTTAAAGTTTCGTTTCAACATGACTCGACTGAAATATCGAGCAATGAATCGGTTCGACGGCGGTATAAAGAGTTCCGTGAAATGCAAGAAGAGAGCAAAAGAGGTCAGCCGTCATGGCATCAATCGCACCATGAACATCGCGGATCTTCCATCTCTGGTGTTCAGAACGACTCTGTTGCTGAAGCTATGAGAAGCGCATCTAACTTGTCTTTTCAGAGCACTCTTTCGTTGCATAGGAAATCTCATTTGCTGAAGGCTAAAGGCAAGTCGAGATTGACAGATCCGCCGGCAGAACCAGACCGGCTCTCCGGCCTCGTTAATAAATCGGGACAGCTCCGATCAGGGTTTCTCGGCAGGACTGACGATGAGGAGGACGACCCTTTTCTGGAGGAGGATTTTCCAGACGATTTCAGAAGGGGTAAGCTCGATGCTCTAACTGTGCTTCAATGGATCAGTTTGTTTCTAATCACTGCTGCTTTAGTTTGCACACTTTCTATTCGTCATTTGAGAGAAAATAGCTTATGGGAATTTAGTATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGGCGATTGGTATCTGGTTGGGGGATTGGGATTGGAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAGAAGGTTCTGTATTTCGTTTATGGGGTTAAGAGGCCGGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTAATCGCTTGGCATTTGTTGTTTGATAAGCGGGTTAAGAATCAAACCAACAGCGATATACTCGATTATGTCAGGAAAAGTTTAGTGTGTCTCTTGTTAGGCACATTGATTTGGCTAGCTAAGACCCTGATGGTGAAGGTGCTTGCATCTTCCTTCCATGTGAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATTGAGACGCTTTCGGGGCCACCACGGATTGAGCTTCAGAAGAGTGAGGAAGAACAGAAGAAAATTGCAGATGAAGTTCAAAGATTACAGAGTGCAGGAGTTCCCGTACCCCCAGATCTAAGGGCAGCAGCTTTATCTTCTATAAAGAGTGGTGAAAGGGTAAGAAGCAATGTGGGGAGCCAGAGAAGTTTGCGTGGAAAAGATCCCAAACTCTCAAGGGTATCTACCAAAAATGGAAGTGAAGGGATAAATATTGACCATTTGCACAAGCTAACTTCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGCTGAAAATAGTTAGATATGGAAGTATTACCACACTGGATGAGCAGATACAGGGGCCGTCTCTTGATGATGAATCTACTACTACCGAGATCAAAAGTGAACGCGAGGCAAGGGCTGCTGCTAAGAAGATTTTTCAGAACGTGGCTCGGCCCAGGTTCAAGTACATATACCTGGACGACTTAATGCGGTTCATGAAAGAAGAAGAGGTTCTTAAAACACTTAGTCGCTTTGAGGGAGCAACTGAGAGCCGGAGGATAAGCAAGTCTGCCTTGAATAATTGGGTGGTCAATGCCTTCAGAGAACGTAGAGCCCTTTCTTTAACACTGAATGATACCAAAACAGCTGTTGATAGACTTCGCCTTGTGGTGAATGTCATATTCAGCATCTTTATATTAGTTTTATGGATTATATTACTAGGAATTGCCTCCAGAAAAGTCATCCTCTACATTAGTTCTCAAATAGTGCTTGCGGCATTCATTTTTGGGAACACTCTAAAGAACATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCGTTCGACGTCGGAGATCGATGTGAAATCGATGATATTCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTGTTCTTGAGACACGACAACCTGAAGATTATTGTCCCAAATAGTGTTCTTGCAACCAAAGTGATCCACAACCACTACCGTAGTCCCGACATGGGCGAATTTATTCAAATCTGTGTCCATATAATGACGCCACTTGAGAAAATTACGGCCATGAAACAGAGAATCATAAGTTTCATTGAAGCCGACAAAGAACACTGGTGTCCTTCCCCAATTATTTTGATGAAGGATATAGATAGTGCAGACAAATTGGCCATGTCAATTTGGCTGTCACACACAATGAACCACCAAGACATAAGGGAAAGATGGGCTCGGAGATCCGTCGTGGTCGAAGAGGTATTGAAGATCTGTCAAGAGTTCGACATTACACCGACTCTCGTCCCACCACCGTGA 2805 44.74 MDSFKKSLKPNGPFKHSRKISAGGAGSEINQEELPILLDHQPSDQHNRLKVRRPANDGEPSGHSDVILKVDDGGSSAVSRSQESAGYGGKVWRESRYDFWSNNDGIGTGGSASWASGARASDSGDRNEGFEFVRRGNGTDDPPTKLIGDFLLKQKVRGETTLDLDLEMEELRLDRTKTPMMDSPLSRASKDLKVSFQHDSTEISSNESVRRRYKEFREMQEESKRGQPSWHQSHHEHRGSSISGVQNDSVAEAMRSASNLSFQSTLSLHRKSHLLKAKGKSRLTDPPAEPDRLSGLVNKSGQLRSGFLGRTDDEEDDPFLEEDFPDDFRRGKLDALTVLQWISLFLITAALVCTLSIRHLRENSLWEFSIWKWEVMVLVLICGRLVSGWGIGIGVFFIERNFLLRKKVLYFVYGVKRPVQNCLWLGLVLIAWHLLFDKRVKNQTNSDILDYVRKSLVCLLLGTLIWLAKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPRIELQKSEEEQKKIADEVQRLQSAGVPVPPDLRAAALSSIKSGERVRSNVGSQRSLRGKDPKLSRVSTKNGSEGINIDHLHKLTSKNVSAWNMKRLLKIVRYGSITTLDEQIQGPSLDDESTTTEIKSEREARAAAKKIFQNVARPRFKYIYLDDLMRFMKEEEVLKTLSRFEGATESRRISKSALNNWVVNAFRERRALSLTLNDTKTAVDRLRLVVNVIFSIFILVLWIILLGIASRKVILYISSQIVLAAFIFGNTLKNIFEAIIFLFVMHPFDVGDRCEIDDIQMVVEEMNILTTVFLRHDNLKIIVPNSVLATKVIHNHYRSPDMGEFIQICVHIMTPLEKITAMKQRIISFIEADKEHWCPSPIILMKDIDSADKLAMSIWLSHTMNHQDIRERWARRSVVVEEVLKICQEFDITPTLVPPP 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9005791 9010204 + CmaCh11G013600.1 Cma11g01360 303869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01360 934 Gene3D - 781 830 IPR023408 -
Cma11g01360 934 MobiDBLite consensus disorder prediction 196 243 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 43 59 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 277 297 - -
Cma11g01360 934 Pfam Mechanosensitive ion channel 724 926 IPR006685 GO:0016020|GO:0055085
Cma11g01360 934 SUPERFAMILY Sm-like ribonucleoproteins 770 830 IPR010920 -
Cma11g01360 934 MobiDBLite consensus disorder prediction 550 577 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 1 87 - -
Cma11g01360 934 MobiDBLite consensus disorder prediction 204 238 - -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 109 932 IPR016688 -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 100 IPR016688 -
Cma11g01360 934 MobiDBLite consensus disorder prediction 110 141 - -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 109 932 - -
Cma11g01360 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 100 - -
Cma11g01360 934 Coils Coil 510 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00081 Cma-Chr9:355518 Cma11g01360 Cma-Chr11:9005791 0 dispersed
Cma11g01360 Cma-Chr11:9005791 Cma17g00069 Cma-Chr17:327028 7.72E-157 dispersed
Cma11g01360 Cma-Chr11:9005791 Cma20g00732 Cma-Chr20:3410359 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01360 K22048 - csv:101207426 1288.09