Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01360 | ATGGATTCCTTCAAGAAATCTCTCAAACCCAATGGACCTTTCAAGCATTCCAGGAAGATTTCTGCCGGCGGAGCTGGAAGCGAAATCAATCAGGAGGAGCTCCCCATTCTTCTCGATCACCAACCCTCTGATCAGCATAATCGCCTTAAGGTTCGTCGACCAGCCAACGACGGCGAACCTTCTGGACACAGTGACGTCATTCTCAAGGTTGATGATGGCGGTTCTTCGGCTGTCTCAAGATCACAGGAGTCTGCCGGCTATGGCGGGAAGGTTTGGCGGGAATCTAGGTATGACTTCTGGAGTAATAATGATGGAATTGGAACTGGAGGAAGTGCGAGTTGGGCCAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTGAGGCGTGGGAATGGTACGGATGATCCGCCGACGAAGCTGATTGGTGATTTTCTTCTTAAGCAGAAAGTTAGAGGCGAAACGACTTTGGATTTGGATCTGGAAATGGAGGAGTTGCGGCTGGATAGGACTAAAACTCCGATGATGGACTCGCCGTTGAGTCGGGCTTCGAAGGATCTTAAAGTTTCGTTTCAACATGACTCGACTGAAATATCGAGCAATGAATCGGTTCGACGGCGGTATAAAGAGTTCCGTGAAATGCAAGAAGAGAGCAAAAGAGGTCAGCCGTCATGGCATCAATCGCACCATGAACATCGCGGATCTTCCATCTCTGGTGTTCAGAACGACTCTGTTGCTGAAGCTATGAGAAGCGCATCTAACTTGTCTTTTCAGAGCACTCTTTCGTTGCATAGGAAATCTCATTTGCTGAAGGCTAAAGGCAAGTCGAGATTGACAGATCCGCCGGCAGAACCAGACCGGCTCTCCGGCCTCGTTAATAAATCGGGACAGCTCCGATCAGGGTTTCTCGGCAGGACTGACGATGAGGAGGACGACCCTTTTCTGGAGGAGGATTTTCCAGACGATTTCAGAAGGGGTAAGCTCGATGCTCTAACTGTGCTTCAATGGATCAGTTTGTTTCTAATCACTGCTGCTTTAGTTTGCACACTTTCTATTCGTCATTTGAGAGAAAATAGCTTATGGGAATTTAGTATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGGCGATTGGTATCTGGTTGGGGGATTGGGATTGGAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAGAAGGTTCTGTATTTCGTTTATGGGGTTAAGAGGCCGGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTAATCGCTTGGCATTTGTTGTTTGATAAGCGGGTTAAGAATCAAACCAACAGCGATATACTCGATTATGTCAGGAAAAGTTTAGTGTGTCTCTTGTTAGGCACATTGATTTGGCTAGCTAAGACCCTGATGGTGAAGGTGCTTGCATCTTCCTTCCATGTGAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATTGAGACGCTTTCGGGGCCACCACGGATTGAGCTTCAGAAGAGTGAGGAAGAACAGAAGAAAATTGCAGATGAAGTTCAAAGATTACAGAGTGCAGGAGTTCCCGTACCCCCAGATCTAAGGGCAGCAGCTTTATCTTCTATAAAGAGTGGTGAAAGGGTAAGAAGCAATGTGGGGAGCCAGAGAAGTTTGCGTGGAAAAGATCCCAAACTCTCAAGGGTATCTACCAAAAATGGAAGTGAAGGGATAAATATTGACCATTTGCACAAGCTAACTTCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGCTGAAAATAGTTAGATATGGAAGTATTACCACACTGGATGAGCAGATACAGGGGCCGTCTCTTGATGATGAATCTACTACTACCGAGATCAAAAGTGAACGCGAGGCAAGGGCTGCTGCTAAGAAGATTTTTCAGAACGTGGCTCGGCCCAGGTTCAAGTACATATACCTGGACGACTTAATGCGGTTCATGAAAGAAGAAGAGGTTCTTAAAACACTTAGTCGCTTTGAGGGAGCAACTGAGAGCCGGAGGATAAGCAAGTCTGCCTTGAATAATTGGGTGGTCAATGCCTTCAGAGAACGTAGAGCCCTTTCTTTAACACTGAATGATACCAAAACAGCTGTTGATAGACTTCGCCTTGTGGTGAATGTCATATTCAGCATCTTTATATTAGTTTTATGGATTATATTACTAGGAATTGCCTCCAGAAAAGTCATCCTCTACATTAGTTCTCAAATAGTGCTTGCGGCATTCATTTTTGGGAACACTCTAAAGAACATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCGTTCGACGTCGGAGATCGATGTGAAATCGATGATATTCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTGTTCTTGAGACACGACAACCTGAAGATTATTGTCCCAAATAGTGTTCTTGCAACCAAAGTGATCCACAACCACTACCGTAGTCCCGACATGGGCGAATTTATTCAAATCTGTGTCCATATAATGACGCCACTTGAGAAAATTACGGCCATGAAACAGAGAATCATAAGTTTCATTGAAGCCGACAAAGAACACTGGTGTCCTTCCCCAATTATTTTGATGAAGGATATAGATAGTGCAGACAAATTGGCCATGTCAATTTGGCTGTCACACACAATGAACCACCAAGACATAAGGGAAAGATGGGCTCGGAGATCCGTCGTGGTCGAAGAGGTATTGAAGATCTGTCAAGAGTTCGACATTACACCGACTCTCGTCCCACCACCGTGA | 2805 | 44.74 | MDSFKKSLKPNGPFKHSRKISAGGAGSEINQEELPILLDHQPSDQHNRLKVRRPANDGEPSGHSDVILKVDDGGSSAVSRSQESAGYGGKVWRESRYDFWSNNDGIGTGGSASWASGARASDSGDRNEGFEFVRRGNGTDDPPTKLIGDFLLKQKVRGETTLDLDLEMEELRLDRTKTPMMDSPLSRASKDLKVSFQHDSTEISSNESVRRRYKEFREMQEESKRGQPSWHQSHHEHRGSSISGVQNDSVAEAMRSASNLSFQSTLSLHRKSHLLKAKGKSRLTDPPAEPDRLSGLVNKSGQLRSGFLGRTDDEEDDPFLEEDFPDDFRRGKLDALTVLQWISLFLITAALVCTLSIRHLRENSLWEFSIWKWEVMVLVLICGRLVSGWGIGIGVFFIERNFLLRKKVLYFVYGVKRPVQNCLWLGLVLIAWHLLFDKRVKNQTNSDILDYVRKSLVCLLLGTLIWLAKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPRIELQKSEEEQKKIADEVQRLQSAGVPVPPDLRAAALSSIKSGERVRSNVGSQRSLRGKDPKLSRVSTKNGSEGINIDHLHKLTSKNVSAWNMKRLLKIVRYGSITTLDEQIQGPSLDDESTTTEIKSEREARAAAKKIFQNVARPRFKYIYLDDLMRFMKEEEVLKTLSRFEGATESRRISKSALNNWVVNAFRERRALSLTLNDTKTAVDRLRLVVNVIFSIFILVLWIILLGIASRKVILYISSQIVLAAFIFGNTLKNIFEAIIFLFVMHPFDVGDRCEIDDIQMVVEEMNILTTVFLRHDNLKIIVPNSVLATKVIHNHYRSPDMGEFIQICVHIMTPLEKITAMKQRIISFIEADKEHWCPSPIILMKDIDSADKLAMSIWLSHTMNHQDIRERWARRSVVVEEVLKICQEFDITPTLVPPP | 934 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9005791 | 9010204 | + | CmaCh11G013600.1 | Cma11g01360 | 303869 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01360 | 934 | Gene3D | - | 781 | 830 | IPR023408 | - | |
Cma11g01360 | 934 | MobiDBLite | consensus disorder prediction | 196 | 243 | - | - | |
Cma11g01360 | 934 | MobiDBLite | consensus disorder prediction | 43 | 59 | - | - | |
Cma11g01360 | 934 | MobiDBLite | consensus disorder prediction | 277 | 297 | - | - | |
Cma11g01360 | 934 | Pfam | Mechanosensitive ion channel | 724 | 926 | IPR006685 | GO:0016020|GO:0055085 | |
Cma11g01360 | 934 | SUPERFAMILY | Sm-like ribonucleoproteins | 770 | 830 | IPR010920 | - | |
Cma11g01360 | 934 | MobiDBLite | consensus disorder prediction | 550 | 577 | - | - | |
Cma11g01360 | 934 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
Cma11g01360 | 934 | MobiDBLite | consensus disorder prediction | 204 | 238 | - | - | |
Cma11g01360 | 934 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 109 | 932 | IPR016688 | - | |
Cma11g01360 | 934 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 2 | 100 | IPR016688 | - | |
Cma11g01360 | 934 | MobiDBLite | consensus disorder prediction | 110 | 141 | - | - | |
Cma11g01360 | 934 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 109 | 932 | - | - | |
Cma11g01360 | 934 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 2 | 100 | - | - | |
Cma11g01360 | 934 | Coils | Coil | 510 | 530 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00081 | Cma-Chr9:355518 | Cma11g01360 | Cma-Chr11:9005791 | 0 | dispersed | |
Cma11g01360 | Cma-Chr11:9005791 | Cma17g00069 | Cma-Chr17:327028 | 7.72E-157 | dispersed | |
Cma11g01360 | Cma-Chr11:9005791 | Cma20g00732 | Cma-Chr20:3410359 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01360 | K22048 | - | csv:101207426 | 1288.09 |