Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g01362 | ATGCCCAATTTGGTGATGATTCGCCGGAGAATTTGGTCAACCAAGACTTTTCACACAGCTGCTTTAACAATCTTCAATGCTCAGCAGTATGTTCGCCGTCGTCCAACTACATTCAGCATTTCTTTTCAGTTGAAACAGAGCAGTTTCTCTTCTTTTCAAGCTCCGGAATTCTATTCCCTGAACAAGAAGATGTCTTATTTGATTCGAACAGGTCAAATAATTGAAGCGAGAGAATTGTTTGATAGCATTAAGCATCGGAATACGGTCACTTGGAATACGATGATCACTGGGTATGTAAAAAGAAGGGAGATGACAAAAGCACGACAGTTGTTCGATGAAATGCCTCACAGAGACATTGTGTCATGGAACTTGATGTTATCAGGTTATATATCTTGTGGTGGAAGGTACATTGAGAGTGGACGAAACCTATTTGATAAAATGCCACAACGAGATTGTGTTTCATGGAACACAATGGTTAGTGGGTATGCTAAGAATGGGATGATGGAAGAAGCCGAAGAACTTTTCAAGTACATGCCTGAGCGTAATGTTGTCTCATGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTTATGTGGAGAAAGCTATTGAGTTCTTCAAGATGATGCCCGAACGAGACTCCGCTTCTCTTAGTGCATTGGTTTCTGGTCTGATTCAGAATGAGAAACTAGTTGAAGCTGAAAGGATTTTGCTTCAATATGGTGGGAGTGATGGTAGAGGGAATTTAGTTCATGCTTATAACACTTTAATTGCTGGATATGGTCAGAAAGGAATGATTCAAGAAGCTCGAAAACTGTTCGATTGCATCCCTAATCGACAGGAAGACGAAAATGGAAGCTTTGGGAAGAATGTGGTATCATGGAACTCTATGATTATGAGCTATGTGAGAGCTGGTGACATAGTCTCTGCTCGAGAACTCTTCGACAAAATGGTCGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTACATTCAAATCTTGGATATGAAAGAGGCCTCGAATCTGTTCGGTAGAATGTCGAATCCCGATACCCTTTCTTGGAATATGATGATTTCTGGGTTTGCTGAGATAGGTAACTTGAAACTAGCTCATGATTTGTTCATTAGGATGCCAGAGAAAAGCCTTGTCTCATGGAATTCCATGATATCTGGGTATGAGAAAAATGAAGACTATAAAGGAGCCATCAACATCTTTTTGCATATGCAATTTGAGGGTAAGAAACCAGATAGACATACTTTATCATCAATTATCAGTGCTTGTGCTGGTTTGGTTGATCTGGCTTTAGGAACTCAGATTCATCAGTTGATTACAAAAGCATTTATTGCAGATTTGCCCATAAACAACTCCCTTGTTACCATGTACTCGAGATGTGGAGCAATCGTCGAGGCACGAACCGTTTTCGACGAAATGAATCTTCAGAGAGATGTCATATCTTGGAACGCGATGATCTGCGCGTATGCCTCTCATGGCTTTGCAACAGAGGCTCTTCAACTTTTTGACTTGATGAACCAATGTAATGTGCAGCCTTCTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGCTGGATTGATTGAAGAAGGCAGGAGGGAATTTAACTCCATGGTTAACACTCACGGTATCGAACCACGAGTTGAACACTATGCTGTCCTTGTCGATATCATCGGTCGACATGGGCAGCTTGAAGAAGCAATGAGTTTGATCAATAACATGCCTTGTAAACCAGATAAAGCGGTGTGGGGTGCTTTACTTGGTGCTTGTAGGGTGCACAACAATGTTGAAATGGCTCGTGTCGCGGCTGAAGCCTTGATGAAACTCGAACCAGAAAGCGCAGCTCCTTACGTGTTGCTATATAACATGTATGCCGATGTGGGACGATGGAATGATGCTGCTGAAGTGAGAACGAGGATGGAGAAGAATAATATTCAAAAGGAAACTGGATATACTCTGCGCGCTTACCCGCGATATTTTGATTCTCAAGCTGTCCTACGGAGGCTTCTCCTCTGCAATTCGCTTCTCTCCGCTCCAGCTTTCGATTCCCTGCCTATGGAGTCTCTAATCAACGCTTCTTCTGCAGCGATTGTCTCTTCTTCTTCCACTTTTCCTATATCTTCTCCCAACAGGATGCTTCCTCTGAGATCTTTTCAAGTTCCGCACGCCTCCAATTGTAACGAGAACGAATCTGATTCTCAGTCTGACTCGAAGAATATCAGGAACCTTCCAATCCTCAGTAAACGTCATCTCTCCCTTTCCCCTCTTTCAAAGGATGTTGCAATGGGAGTGGTGCTTAGTGCAGCCACGGGAAGAGGGTGGACGACAGGGTCTGGTATGGAAGGCCCCTCATCTCCGGTCGGGTTGGAAGCCAAATCAGGCACAGAGAATGTCTCCACTTTCCCTTGGTCCCTTTTCACGAAATCTCCTCGGCGAAGAATGCTTGTGGCTTTTACTTGTAAAATTTGTGGGCAACGTACAACACGGGCTATTAACCCCCATGCTTATACCGATGGCACTGTGTTTGTGCAGTGTTGTGGATGCAGTGCATACCACAAGCTTGTGGACAACTTAAACCTGTTTCATGAAATGAAATGCTACGTTAACCCGAGTTTTAACTATGGGAGTAATGGGTGGGGCGATGTGAACTTCAAATATCTGGACATGGAGGAAGATGGAAGCAACGATATATTCCCGAATCAATGA | 2730 | 43.15 | MPNLVMIRRRIWSTKTFHTAALTIFNAQQYVRRRPTTFSISFQLKQSSFSSFQAPEFYSLNKKMSYLIRTGQIIEARELFDSIKHRNTVTWNTMITGYVKRREMTKARQLFDEMPHRDIVSWNLMLSGYISCGGRYIESGRNLFDKMPQRDCVSWNTMVSGYAKNGMMEEAEELFKYMPERNVVSWNAMVSGYLMNGYVEKAIEFFKMMPERDSASLSALVSGLIQNEKLVEAERILLQYGGSDGRGNLVHAYNTLIAGYGQKGMIQEARKLFDCIPNRQEDENGSFGKNVVSWNSMIMSYVRAGDIVSARELFDKMVERDTFSWNTMISGYIQILDMKEASNLFGRMSNPDTLSWNMMISGFAEIGNLKLAHDLFIRMPEKSLVSWNSMISGYEKNEDYKGAINIFLHMQFEGKKPDRHTLSSIISACAGLVDLALGTQIHQLITKAFIADLPINNSLVTMYSRCGAIVEARTVFDEMNLQRDVISWNAMICAYASHGFATEALQLFDLMNQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIEPRVEHYAVLVDIIGRHGQLEEAMSLINNMPCKPDKAVWGALLGACRVHNNVEMARVAAEALMKLEPESAAPYVLLYNMYADVGRWNDAAEVRTRMEKNNIQKETGYTLRAYPRYFDSQAVLRRLLLCNSLLSAPAFDSLPMESLINASSAAIVSSSSTFPISSPNRMLPLRSFQVPHASNCNENESDSQSDSKNIRNLPILSKRHLSLSPLSKDVAMGVVLSAATGRGWTTGSGMEGPSSPVGLEAKSGTENVSTFPWSLFTKSPRRRMLVAFTCKICGQRTTRAINPHAYTDGTVFVQCCGCSAYHKLVDNLNLFHEMKCYVNPSFNYGSNGWGDVNFKYLDMEEDGSNDIFPNQ | 909 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 9028796 | 9034133 | + | CmaCh11G013620.1 | Cma11g01362 | 303871 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g01362 | 909 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 184 | 213 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 153 | 184 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 89 | 120 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 486 | 519 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 385 | 418 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 355 | 384 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 292 | 321 | IPR002885 | - | |
| Cma11g01362 | 909 | TIGRFAM | PPR: pentatricopeptide repeat domain | 252 | 274 | IPR002885 | - | |
| Cma11g01362 | 909 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 484 | 518 | IPR002885 | - | |
| Cma11g01362 | 909 | ProSiteProfiles | Zinc finger DNL-type profile. | 817 | 909 | IPR007853 | GO:0008270 | |
| Cma11g01362 | 909 | Pfam | PPR repeat family | 483 | 531 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat family | 383 | 430 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat family | 86 | 118 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | E motif | 601 | 660 | IPR046848 | - | |
| Cma11g01362 | 909 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 87 | 121 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | DNL zinc finger | 824 | 873 | IPR007853 | GO:0008270 | |
| Cma11g01362 | 909 | MobiDBLite | consensus disorder prediction | 783 | 802 | - | - | |
| Cma11g01362 | 909 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 383 | 417 | IPR002885 | - | |
| Cma11g01362 | 909 | Gene3D | Tetratricopeptide repeat domain | 319 | 451 | IPR011990 | GO:0005515 | |
| Cma11g01362 | 909 | Gene3D | Tetratricopeptide repeat domain | 454 | 703 | IPR011990 | GO:0005515 | |
| Cma11g01362 | 909 | Gene3D | Tetratricopeptide repeat domain | 19 | 134 | IPR011990 | GO:0005515 | |
| Cma11g01362 | 909 | Gene3D | Tetratricopeptide repeat domain | 135 | 239 | IPR011990 | GO:0005515 | |
| Cma11g01362 | 909 | PANTHER | OS07G0578800 PROTEIN-RELATED | 56 | 660 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma11g01362 | 909 | PANTHER | OS06G0228900 PROTEIN | 56 | 660 | - | - | |
| Cma11g01362 | 909 | SUPERFAMILY | TPR-like | 162 | 647 | IPR011990 | GO:0005515 | |
| Cma11g01362 | 909 | Gene3D | Tetratricopeptide repeat domain | 244 | 317 | IPR011990 | GO:0005515 | |
| Cma11g01362 | 909 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 151 | 185 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 355 | 382 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 292 | 320 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 252 | 276 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 457 | 479 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 323 | 348 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 184 | 212 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 559 | 583 | IPR002885 | - | |
| Cma11g01362 | 909 | Pfam | PPR repeat | 153 | 183 | IPR002885 | - | |
| Cma11g01362 | 909 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 352 | 382 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g01362 | - | - | - | bhj:120077123 | 1147.5 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01552 | Cma-Chr4:7863088 | Cma11g01362 | Cma-Chr11:9028796 | 6.98E-17 | dispersed | |
| Cma11g01362 | Cma-Chr11:9028796 | Cma11g00305 | Cma-Chr11:1511605 | 6.13E-19 | dispersed | |
| Cma06g01290 | Cma-Chr6:8583598 | Cma11g01362 | Cma-Chr11:9028796 | 7.69E-140 | transposed | |
| Cma09g00713 | Cma-Chr9:3377282 | Cma11g01362 | Cma-Chr11:9028796 | 1.08E-09 | transposed | |
| Cma14g00520 | Cma-Chr14:2583842 | Cma11g01362 | Cma-Chr11:9028796 | 6.38E-52 | transposed | |
| Cma16g00448 | Cma-Chr16:2236071 | Cma11g01362 | Cma-Chr11:9028796 | 6.07E-126 | transposed | |
| Cma11g01362 | Cma-Chr11:9028796 | Cma19g00756 | Cma-Chr19:7506783 | 1.79E-127 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g213 | . | . | . | . | . | . | . | . | . | Cmo11g01756 | . | . | . | . | . | . | . | Bhi05g01672 | . | . | . | Hepe02g0402 | . | . | Cla02g00403 | . | . | . | . | . | . | . | Cone8ag1304 | . | . | . | Csa07g00127 | . | . | . | . | . | . | Bpe15g00799 | . | Bma03g00618 | . | . | . | . | Cma11g01362 | . | Car11g01386 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi11g01222 | . | Chy01g00656 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0014695 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 19 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma11g01362 | Cma_Chr11 | FPKM | 1.506614 | 0.999461 | 4.037245 | 3.641719 | 4.776943 | 5.291729 | 5.408988 | 8.841457 | 9.251856 | 8.260391 |