Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01363 ATGGAAAGCGAATTCCAGAGATCGTTTTCTTCGCGGGTGAACCGTAGAGGAGATCGTAATATTCAAAATCTGCACCATAAAGATGTTGAAGGAGGTTTAATTTCTCCTGGAAAGTTGCCTGCGGATTACCCAATGAAGATTTTTTGGAAGAAGGGGTTTATTCGATTATTTCTTGTGGGTGGAATTTTATGGATGTTGCTGATTCTCACTGCCTCCCTCTTTCATGTTTGGTCTTGCCATTCTTCCATCACTTTTTTCTCCGCTATGTGTAATAAAGATAGTAAAGTTTTCACAATCTTGGACTCAATGGGATTCATGGCGAAGGCACAACACCGTTGTTCGATTCCCTTAGTGGATGAAGCTGATAGAGTAGTCATTCCGAAAGGAAGAACTCCAGATGAAATTGTCAAAAAACTTGTCTACATCACCGAAGATGAGTACTCGTTAAATGGATCTCAAACATCCCCGCTGTTTGGAGGACACCAGAACTGGACTCAAAGAGAGGAAAGCTTTAAACTAAAACCAACCATGAAGGTGCATTGTGGTTTTATGCGAAATGGTGGGGCTGAAATGGTTCCTGCTGATATCAAGTATGTCAAGAAGTGTAGGTTTGTGGTTGCCTCAGGAATTTTTGATGGATATGATGTTCCTCAACAGCCTTCAAATATAAGTGTTCGCTCTAAAGATCTATTCTGCTTCCTTATGGTGGTGGATGAGATTTCTATGCAATTTATTAGAGAAAATGTTACCATTGAGGTGGATAACGATGGAGGAAAATGGGTTGGTATCTGGCGCCTCGTTCTACTAAAGCATCCACCCTATGATGAGCCACGAAGAAATGGAAAGGTTCCGAAGATAATAACTCACCGATTGTTCCCTCAAGCACAGTATAGTATCTGGATTGATGGTAAAATGGAGCTTATTGTTGACCCTCTGCTCATTCTAGAAAGATACTTGTGGCGTGGGAATCATTCCTTTGCCATTGCGCAACATAAGCATCATCGTAGTATCTATGAAGAGGCTGATTCCAATAAGCGAAGGAAGCGATATGCTCGTCCTCTTATTGACCTTCACATGAAAATATACCGTTATGAAGGAATGGAACCATGGAGTCCAGAGAAGAAAACTGTCAGTGATGTTCCAGAGGGAGCCATTATTATAAGGGAACATACAGCAATGAGTAATTTGTTTAGCTGCCTATGGTTCAACGAAGTTCACATGTTCACACCAAGAGACCAACTGAGTTTCGGGTACGTGGTATACAGGCTAGGCAATTCTTTCAAGTATTTCATGTTTCCGAATTGCGAGTATTACTCGCTTTTTATTTTGCACCCACATACAAGAGAGCACTCTTCTCTGATAGAGTGGGTTAAAGATTGGGATCAACTTAAGGGGAAGATGAGCAGCATGAAAGAGTATAAACAATGGAAGAAGCGTAACCCGTCGACGAGTTTGATAGAGACTAAGGGAGGATTAGGTTTGTGGACTACTTACCCTGGAAACCTTGATTCAGTTGTACTCCCATCTGTGGTGAGATCATCAAAAGCAGGATGA 1554 41.51 MESEFQRSFSSRVNRRGDRNIQNLHHKDVEGGLISPGKLPADYPMKIFWKKGFIRLFLVGGILWMLLILTASLFHVWSCHSSITFFSAMCNKDSKVFTILDSMGFMAKAQHRCSIPLVDEADRVVIPKGRTPDEIVKKLVYITEDEYSLNGSQTSPLFGGHQNWTQREESFKLKPTMKVHCGFMRNGGAEMVPADIKYVKKCRFVVASGIFDGYDVPQQPSNISVRSKDLFCFLMVVDEISMQFIRENVTIEVDNDGGKWVGIWRLVLLKHPPYDEPRRNGKVPKIITHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGNHSFAIAQHKHHRSIYEEADSNKRRKRYARPLIDLHMKIYRYEGMEPWSPEKKTVSDVPEGAIIIREHTAMSNLFSCLWFNEVHMFTPRDQLSFGYVVYRLGNSFKYFMFPNCEYYSLFILHPHTREHSSLIEWVKDWDQLKGKMSSMKEYKQWKKRNPSTSLIETKGGLGLWTTYPGNLDSVVLPSVVRSSKAG 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9035952 9039597 + CmaCh11G013630.1 Cma11g01363 303872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01363 517 Pfam Protein of unknown function (DUF616) 139 446 IPR006852 -
Cma11g01363 517 PANTHER ALKALINE CERAMIDASE-RELATED 1 517 IPR006852 -
Cma11g01363 517 PANTHER OS06G0724300 PROTEIN 1 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01363 - - - csv:101222025 1001.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01363 Cma-Chr11:9035952 Cma18g00368 Cma-Chr18:2001602 3.43E-81 dispersed
Cma11g01363 Cma-Chr11:9035952 Cma13g00644 Cma-Chr13:6092021 4.99E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g204 . . . . . . . . . Cmo11g01754 . . . . . Cpe04g00606 . . . . . . . . . . . . . . . . . . . . . . . Blo04g00584 . . Bda14g00626 Bpe15g00801 . . . . . . Cma11g01363 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004952 1 5 1 0 1 1 1 1 1 2 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01363 Cma_Chr11 FPKM 7.194475 8.414652 7.539965 8.079502 10.614613 9.122243 11.911481 5.97194 7.862943 7.217222