Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01365 ATGGATTCAGGAAGTTTCTTAATCGTTGTTTCGATCGCTTCGGATTCTCTATGGGTATGGAACAAAACAATCACGATGCCGAGGAGGGGACTCTGGAGATTGGCATGGGTAGAATATAGAACAGTCTCTGGTGTTGCTGGTCCATTGGTTATTCTGGACAAAGTCAAGGGACCTAAGTTTCAGGAGATTGTTAATATTCGGCTAGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAAGTTGATGGAGAGAAAGCTGTTGTCCAGGTTTTTGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTTTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATCCTGCCCGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAAAGAACTTATCCCGAAGAGATGATACAGACGGGGATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAGGCTGGCTTGGTAAAGCGGTTGGAGCAATCTAAAGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTTAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAGCGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACTATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACTGAGGGACAGATTTACATCGATAGGCAGCTCTATAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCTATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCGCTCTCTTCTGAGGATCTGCTCTATTTAGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCAGTCAAGGAGCTTACGACACTCGAAACATTTTCCAATCGCTCGATCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTCCACCGTATACCTGCAAAGACTCTTGATCAGTTTTACAGCCGAGAATCTGCAAATTGA 1485 43.77 MDSGSFLIVVSIASDSLWVWNKTITMPRRGLWRLAWVEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEQSKDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRESAN 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9040663 9045436 - CmaCh11G013650.1 Cma11g01365 303874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01365 494 Pfam ATP synthase alpha/beta family, beta-barrel domain 42 108 IPR004100 GO:0046034|GO:1902600
Cma11g01365 494 PIRSF V-ATPsynth_beta/V-ATPase_B 31 494 IPR022879 -
Cma11g01365 494 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 38 493 IPR005723 GO:0033180|GO:0046961|GO:1902600
Cma11g01365 494 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 37 494 IPR022879 -
Cma11g01365 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 401 IPR027417 -
Cma11g01365 494 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 165 395 IPR000194 GO:0005524
Cma11g01365 494 CDD V_A-ATPase_B 110 397 - -
Cma11g01365 494 ProSitePatterns ATP synthase alpha and beta subunits signature. 386 395 IPR020003 GO:0005524
Cma11g01365 494 CDD ATP-synt_V_A-type_beta_N 38 109 - -
Cma11g01365 494 Hamap V-type ATP synthase beta chain [atpB]. 36 492 IPR022879 -
Cma11g01365 494 Gene3D - 47 494 - -
Cma11g01365 494 CDD ATP-synt_V_A-type_beta_C 405 487 - -
Cma11g01365 494 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 37 494 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01365 Cma19g00752 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01365 Cma-Chr11:9040663 Cma15g00938 Cma-Chr15:4979130 4.84E-26 dispersed
Cma11g01365 Cma-Chr11:9040663 Cma19g00752 Cma-Chr19:7482281 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01365 K02147 - csv:101211838 885.945