Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01366 | ATGTTATCGGAGTTGATGAACTTATTGAGGGCCTGTTTTGGGCCAAGCTCCGATCGGTCTGCGGCGGGCGATATCAGGGGGCGGCAGGACGGGCTGTTGTGGTACAAAGATAGTGGACACCATTTGAATGGTGAGTACTCAATGTCTGTGGTTCAGGCCAACAATTTGCTTGAAGATCAGAGTCAGATTGAGTCAGGCAGTTTGAGCTCAGATGAGTCTGGTCCCTTTGGGACCTTTGTTGGTGTGTATGATGGCCATGGAGGCCCCGAGACGTCTCGGTATATCTGTGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCCGAGCAAGATTCAATGTCTGCGGATGTAATACGTAAGGCATTCCAAGCGACAGAAGACGGTTTTCTTTCTATAGTTCGAAGACAATGGTCGACGAATCCACAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATATGTAATGGGACTCTCTATATTGCAAATCTAGGTGATTCTCGTGCTGTTTTGGGTAGAATGGTGAAGGCAACCGGTGATGTTATAGCCATTCAGTTATCGACCGAGCACAATGTTGCTAACGAGTCTGTGCGGCAAGAGCTGCAATCTTTGCACCCCGAAGACTCGCAAATTGTGGTTTTAAAGCATAATGTTTGGCGCGTCAAGGGCATAATACAGATTTCCAGATCGATAGGCGATGTCTACTTGAAAAAAGCTGAGTTCAACAGAGAGCCTCTGTATTCAAAGTTTCGAGTTCGCGAACCCTTCAAGAAGCCGATTTTGAGCTCGGAACCAGCCATTTCTGAGACCCAGTTGAAGCCAGATGATCAATTCATTATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCCGTCAATATTGTTCATAAGCATTCTCAAAATGGAAGCGCACGAAGACTCGTCAAAGCTGCTCTTCAAATAGCTGCAAAGAAGAGAGAAATGAGATACTCAGACTTGAAGAAGATCGACCGCGGTGTTCGTCGCCATTTCCACGACGACATCACCGTGGTGGTTGTGTTTCTCGATTCAAATCTACTCTTCAGAGCCAGCTCCACAAAGAGCTCGAGTGTCTCACTACGAGGAGGTGGAGTCAACAACTGGCTCCCTAACTCCTCTTTAGCACCCGTCCCTACACCGACGTAG | 1179 | 47.07 | MLSELMNLLRACFGPSSDRSAAGDIRGRQDGLLWYKDSGHHLNGEYSMSVVQANNLLEDQSQIESGSLSSDESGPFGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDSMSADVIRKAFQATEDGFLSIVRRQWSTNPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRMVKATGDVIAIQLSTEHNVANESVRQELQSLHPEDSQIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYSKFRVREPFKKPILSSEPAISETQLKPDDQFIIFASDGLWEHLSNQEAVNIVHKHSQNGSARRLVKAALQIAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLLFRASSTKSSSVSLRGGGVNNWLPNSSLAPVPTPT | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9047629 | 9052310 | - | CmaCh11G013660.1 | Cma11g01366 | 303875 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01366 | 392 | ProSitePatterns | PPM-type phosphatase domain signature. | 79 | 87 | IPR000222 | GO:0043169 | |
Cma11g01366 | 392 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN | 6 | 381 | - | - | |
Cma11g01366 | 392 | SUPERFAMILY | PP2C-like | 48 | 354 | IPR036457 | - | |
Cma11g01366 | 392 | SMART | PP2C_4 | 37 | 351 | IPR001932 | - | |
Cma11g01366 | 392 | Gene3D | - | 34 | 361 | IPR036457 | - | |
Cma11g01366 | 392 | ProSiteProfiles | PPM-type phosphatase domain profile. | 45 | 353 | IPR001932 | - | |
Cma11g01366 | 392 | Pfam | Protein phosphatase 2C | 77 | 317 | IPR001932 | - | |
Cma11g01366 | 392 | CDD | PP2Cc | 46 | 353 | IPR001932 | - | |
Cma11g01366 | 392 | PANTHER | ALPHABET, ISOFORM E-RELATED | 6 | 381 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00269 | Cma11g01366 | CCT | |
Cma11g01366 | Cma20g00740 | CCT | |
Cma11g01366 | Cma19g00750 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01366 | Cma-Chr11:9047629 | Cma16g01252 | Cma-Chr16:9468656 | 0 | dispersed | |
Cma19g00562 | Cma-Chr19:6383319 | Cma11g01366 | Cma-Chr11:9047629 | 2.28E-138 | dispersed | |
Cma11g01366 | Cma-Chr11:9047629 | Cma19g00750 | Cma-Chr19:7473265 | 0 | wgd | |
Cma11g01366 | Cma-Chr11:9047629 | Cma02g00269 | Cma-Chr2:1227050 | 0 | wgd | |
Cma11g01366 | Cma-Chr11:9047629 | Cma20g00740 | Cma-Chr20:3468634 | 0 | wgd | |
Cma11g01366 | Cma-Chr11:9047629 | Cma03g00656 | Cma-Chr3:5525611 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01366 | - | K01102 | csv:101211601 | 678.322 |