Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01366 ATGTTATCGGAGTTGATGAACTTATTGAGGGCCTGTTTTGGGCCAAGCTCCGATCGGTCTGCGGCGGGCGATATCAGGGGGCGGCAGGACGGGCTGTTGTGGTACAAAGATAGTGGACACCATTTGAATGGTGAGTACTCAATGTCTGTGGTTCAGGCCAACAATTTGCTTGAAGATCAGAGTCAGATTGAGTCAGGCAGTTTGAGCTCAGATGAGTCTGGTCCCTTTGGGACCTTTGTTGGTGTGTATGATGGCCATGGAGGCCCCGAGACGTCTCGGTATATCTGTGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCCGAGCAAGATTCAATGTCTGCGGATGTAATACGTAAGGCATTCCAAGCGACAGAAGACGGTTTTCTTTCTATAGTTCGAAGACAATGGTCGACGAATCCACAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATATGTAATGGGACTCTCTATATTGCAAATCTAGGTGATTCTCGTGCTGTTTTGGGTAGAATGGTGAAGGCAACCGGTGATGTTATAGCCATTCAGTTATCGACCGAGCACAATGTTGCTAACGAGTCTGTGCGGCAAGAGCTGCAATCTTTGCACCCCGAAGACTCGCAAATTGTGGTTTTAAAGCATAATGTTTGGCGCGTCAAGGGCATAATACAGATTTCCAGATCGATAGGCGATGTCTACTTGAAAAAAGCTGAGTTCAACAGAGAGCCTCTGTATTCAAAGTTTCGAGTTCGCGAACCCTTCAAGAAGCCGATTTTGAGCTCGGAACCAGCCATTTCTGAGACCCAGTTGAAGCCAGATGATCAATTCATTATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCCGTCAATATTGTTCATAAGCATTCTCAAAATGGAAGCGCACGAAGACTCGTCAAAGCTGCTCTTCAAATAGCTGCAAAGAAGAGAGAAATGAGATACTCAGACTTGAAGAAGATCGACCGCGGTGTTCGTCGCCATTTCCACGACGACATCACCGTGGTGGTTGTGTTTCTCGATTCAAATCTACTCTTCAGAGCCAGCTCCACAAAGAGCTCGAGTGTCTCACTACGAGGAGGTGGAGTCAACAACTGGCTCCCTAACTCCTCTTTAGCACCCGTCCCTACACCGACGTAG 1179 47.07 MLSELMNLLRACFGPSSDRSAAGDIRGRQDGLLWYKDSGHHLNGEYSMSVVQANNLLEDQSQIESGSLSSDESGPFGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDSMSADVIRKAFQATEDGFLSIVRRQWSTNPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRMVKATGDVIAIQLSTEHNVANESVRQELQSLHPEDSQIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYSKFRVREPFKKPILSSEPAISETQLKPDDQFIIFASDGLWEHLSNQEAVNIVHKHSQNGSARRLVKAALQIAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLLFRASSTKSSSVSLRGGGVNNWLPNSSLAPVPTPT 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9047629 9052310 - CmaCh11G013660.1 Cma11g01366 303875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01366 392 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Cma11g01366 392 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 6 381 - -
Cma11g01366 392 SUPERFAMILY PP2C-like 48 354 IPR036457 -
Cma11g01366 392 SMART PP2C_4 37 351 IPR001932 -
Cma11g01366 392 Gene3D - 34 361 IPR036457 -
Cma11g01366 392 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
Cma11g01366 392 Pfam Protein phosphatase 2C 77 317 IPR001932 -
Cma11g01366 392 CDD PP2Cc 46 353 IPR001932 -
Cma11g01366 392 PANTHER ALPHABET, ISOFORM E-RELATED 6 381 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00269 Cma11g01366 CCT
Cma11g01366 Cma20g00740 CCT
Cma11g01366 Cma19g00750 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01366 Cma-Chr11:9047629 Cma16g01252 Cma-Chr16:9468656 0 dispersed
Cma19g00562 Cma-Chr19:6383319 Cma11g01366 Cma-Chr11:9047629 2.28E-138 dispersed
Cma11g01366 Cma-Chr11:9047629 Cma19g00750 Cma-Chr19:7473265 0 wgd
Cma11g01366 Cma-Chr11:9047629 Cma02g00269 Cma-Chr2:1227050 0 wgd
Cma11g01366 Cma-Chr11:9047629 Cma20g00740 Cma-Chr20:3468634 0 wgd
Cma11g01366 Cma-Chr11:9047629 Cma03g00656 Cma-Chr3:5525611 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01366 - K01102 csv:101211601 678.322