Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01368 ATGATGCAAGACGCTGAGATGAAGGAGCTTCCTGCTTCTGTTTCTTCTTCAACTTCTCCTTCAACTTCTCCTTCAACTTTACAGCATTTGAAAGAGATTGTGTCGCTCATTGAAGCCGGCGCTTATGCCCGGGAAGTCCGGCGAGTTTTTCGAGCTATTCGTCTGACTATGGCGTTAAGGCGGAGATTGAAGGCATCTGTCATTTTTTCATTCCTGAATTTTGCTCTCCCGCCGGGATCCGACGTACACACGAAGTTATCGTCATTTATTCCGAAGGAGGATGACTGCGAAATGGAAATTGACTCGGCATCGCCGGCAGCTGCAAAACTCCCCTTACCTGCTGAGATTGAGATATTCTGCTATTTGATTGTGCTAATATTTCTGATTGATCAGAAGAAATATGATGAGGCTGTGGCTTGTGCTTCAGCAAGCATTGCCCGACTGAAGAACCTGAATAGGAGAACGGTTGATGTGCTAGCGTCTAGACTCTATTCCTATTACTCACTTAGCTACCAACTCACTGGTAACCTTGCTGAAATAAGAGGTAACCTCCTAGCCCTGCATCGCACCGCGACCTTACGCCGCGACGAATTGGGTCAGGAAACCCTTCTTAACCTACTGCTTTTCAATTACCTGCACTACAATCTTTATGATCAAGCAGAGAAGTTAAGGTCCAAGGCACCTCGATTTGAAGCTCACTCAAATCAGCAGGCAAGTTTAAGCGCTTTATTCTGTAGGTACCTGTTTTACCTTGGCAAGATCAGGACCATTCAATTGGAATATACAGATGCAAAGGAATCTCTACTACAGGCTGCTCGGAAAGCTCCTACTGCAGCTCGCGGTTTCCGAGTGCAATGCAACAAATGGGCTATCATTGTTCGTTTGTTGTTGGGAGAAATCCCTGAGAGGACTGTTTTCACGCAGAAAGGCATGGAGATAGCTCTGAGGCCATACTTTGAACTAACAAATGCTGTGAGAATTGGTGACTTGGAGCGTTTCAAAACGGTTGCCGAGAAGTTCTCTTGTACTTTCAGCTCAGATCGGACCAACAACTTGATCGTGAGGCTGCGACATAATGTAATTAGAACTGGGATTCACAACATTAGCTTATCATATTCGCGCATTTCTCTGGCTGATGTTGCTAAAAAGTTGAGACTGAACTCTGAAAATCCTATTGCTGATGCTGAGAATATCGTCACCAAGGCCATTCGAGATGGAGCAATCGACGCCACAGTTGATCATGCAAATGGATGGATGGTATCCAAGGAGACTGGAGACATCTACTCTACCAATGAACCTCAAATTGCCTTGAACTCTAGGATTGCATTCTGCCTGAATATGCATAATGATGCAGTTCGTGCTCTCAGGTTTCCATCAAACTCCCAGAAAGAAAAGGAAAGTGCTGAGAAAAGGAGAGAAAGACGGCAGCAGGAGAAAGAACTTGCTAAGAATATAGCTGAAGGAGACGATGACGACTTTTTAACTGATCCGATGTGA 1497 45.02 MMQDAEMKELPASVSSSTSPSTSPSTLQHLKEIVSLIEAGAYAREVRRVFRAIRLTMALRRRLKASVIFSFLNFALPPGSDVHTKLSSFIPKEDDCEMEIDSASPAAAKLPLPAEIEIFCYLIVLIFLIDQKKYDEAVACASASIARLKNLNRRTVDVLASRLYSYYSLSYQLTGNLAEIRGNLLALHRTATLRRDELGQETLLNLLLFNYLHYNLYDQAEKLRSKAPRFEAHSNQQASLSALFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPTAARGFRVQCNKWAIIVRLLLGEIPERTVFTQKGMEIALRPYFELTNAVRIGDLERFKTVAEKFSCTFSSDRTNNLIVRLRHNVIRTGIHNISLSYSRISLADVAKKLRLNSENPIADAENIVTKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQIALNSRIAFCLNMHNDAVRALRFPSNSQKEKESAEKRRERRQQEKELAKNIAEGDDDDFLTDPM 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9059967 9063497 + CmaCh11G013680.1 Cma11g01368 303877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01368 498 ProSiteProfiles PCI domain profile. 245 426 IPR000717 -
Cma11g01368 498 Gene3D - 212 443 - -
Cma11g01368 498 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 493 - -
Cma11g01368 498 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 351 444 - -
Cma11g01368 498 Pfam PCI domain 317 422 IPR000717 -
Cma11g01368 498 SUPERFAMILY Winged helix DNA-binding domain 353 427 IPR036390 -
Cma11g01368 498 Pfam Proteasome regulatory subunit C-terminal 426 492 IPR013586 GO:0000502|GO:0030234|GO:0042176
Cma11g01368 498 MobiDBLite consensus disorder prediction 457 498 - -
Cma11g01368 498 MobiDBLite consensus disorder prediction 10 26 - -
Cma11g01368 498 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 1 493 - -
Cma11g01368 498 MobiDBLite consensus disorder prediction 1 26 - -
Cma11g01368 498 Coils Coil 460 485 - -
Cma11g01368 498 MobiDBLite consensus disorder prediction 459 490 - -
Cma11g01368 498 SMART PINT_4 351 444 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01368 K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3 - csv:101210117 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00958 Cma-Chr8:5983261 Cma11g01368 Cma-Chr11:9059967 0 dispersed
Cma11g01368 Cma-Chr11:9059967 Cma17g00036 Cma-Chr17:155072 0 dispersed
Cma11g01368 Cma-Chr11:9059967 Cma19g00748 Cma-Chr19:7441197 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g179 . . . . . Bpe12g00127 . . Cmo19g00757 Cmo11g01750 . . . . . Cpe04g00602 Cpe15g00601 Bhi05g01695 Tan02g0667 . . Hepe02g0415 . . Cla02g00415 Cam02g0425 Cec02g0423 Cco02g0441 Clacu02g0426 Cmu02g0421 Cre02g0755 . . . . . Csa07g00112 . Cme01g01250 . Blo13g00498 Bda15g01028 . . . . Bma08g00613 . . . Cma11g01368 . . Car19g00576 . . . . . . . . . . . . . . . . . . Chy01g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01368 Cma_Chr11 FPKM 5.796724 5.918855 3.105155 3.311529 2.987946 3.837934 2.739636 0.985515 0.69385 0.871554