Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01369 ATGGAGAATTTTCTTTTATCCGACCTTCGTCGTGGTATCGCAACAGGAATTTCGCATTGCCCAAGTTTTGGCCCAATCCAGGAGAAGAAAACCGACCGGTCACCGCCGAAAATGATCGTCTGCGTTGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTTCATCACATCGTTCACTGTTCGCTGGATGTCGTCGATGAGCGAGTGAACAATCCGAGAAAATCTGGACCGACCTTGAATGAGACCTTTCTCGGTCTTCTTTATCCGACTGAAAATTACAAAGTGTATGGCTACTTGACTAATACCAAAGTGAAGTTCATTATGGTGACCACAGATCTAGATGTCAGAGATGCCGATGTGAGAAATTTCTTCCGGAGATTCCATGCTGCATACGTGGATGCAGTTTCAAACCCATTCCATGTACCAGGTAAGAAAATTACTTCCAAAACTTTTGCTGAAAGTGTGAGTACCATAGTCAAGTCGTTTGGGTTCAGTTCAGCTATTTGA 543 45.49 MENFLLSDLRRGIATGISHCPSFGPIQEKKTDRSPPKMIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9063823 9067264 - CmaCh11G013690.1 Cma11g01369 303878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01369 180 SMART Sybindin_2 54 174 IPR007233 GO:0016192|GO:0030008
Cma11g01369 180 Gene3D - 32 177 - -
Cma11g01369 180 SUPERFAMILY SNARE-like 39 174 IPR011012 -
Cma11g01369 180 PANTHER BNAA06G40850D PROTEIN 38 175 - -
Cma11g01369 180 CDD TRAPPC2L 40 171 IPR044760 GO:0006888
Cma11g01369 180 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 38 175 IPR006722 GO:0006888
Cma11g01369 180 Pfam Sedlin, N-terminal conserved region 44 172 IPR006722 GO:0006888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01369 K20301 TRAPPC2, TRS20; trafficking protein particle complex subunit 2 - csv:101211102 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00002 Cma-Chr2:3318 Cma11g01369 Cma-Chr11:9063823 1.65E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g178 . . . . . . . . . Cmo11g01749 . . . . Sed05g3908 Cpe04g00601 . Bhi05g01696 Tan02g0668 Cmetu01g1432 . Hepe02g0416 . . Cla02g00416 Cam02g0426 Cec02g0424 Cco02g0442 Clacu02g0427 Cmu02g0422 Cre02g0756 . . Cone3ag0958 Cone10ag1231 . Csa07g00111 . Cme01g01251 . . . . . . . . . . . Cma11g01369 . . . . . . . . . . . . . . . . . . . Lsi11g01211 . Chy01g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010608 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01369 Cma_Chr11 FPKM 29.008385 31.491953 19.401182 17.505707 20.946629 20.333994 19.562664 21.526972 21.357586 25.173656