Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01375 ATGTCGAAAGAGGTGATGGAAGAAGGACAATCCGGCCTGAGAAAGGACTACGTCGATCCACCGCCGGCCCCGCTCATCGACGTCGCCGAACTCTCCCTCTGGTCCTTTTACAGAGCCCTAATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAGACCAATGTTTGCGACGGCGTCGGAATCCTCGGAATCGCTTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCAGGTGGACACATTAATCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATCAGAGCCGTCGGGTACATGGTAGCGCAGTGTGCCGGAGCAATCGTCGGCGTTGGGTTGGTTAAGGCGTTTATGAAACACGATTATAACGGCCACGGCGGCGGAGCTAACTCCGTTCAGTCTGGTTACAGTAGGGGTACGGCTCTTGGCGCTGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACCGATCCCAAGAGAAGCGCGCGTGACTCTCACATTCCGGTTTTGGCGCCATTGCCGATTGGATTTGCGGTGTTTATGGTTCATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCGGCGAGAAGCTTCGGCGCCGCCGTGATTTACAACAATGAAAAAGCCTGGAACGACCACTGGATCTTCTGGGTCGGTCCGTTCGTCGGAGCACTGGCGGCGGCTGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACCAACTGA 843 55.87 MSKEVMEEGQSGLRKDYVDPPPAPLIDVAELSLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTNVCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAIVGVGLVKAFMKHDYNGHGGGANSVQSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9078606 9080113 - CmaCh11G013750.1 Cma11g01375 303884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01375 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Cma11g01375 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
Cma11g01375 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cma11g01375 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma11g01375 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Cma11g01375 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cma11g01375 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01375 Cma19g00744 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01375 Cma-Chr11:9078606 Cma07g00928 Cma-Chr7:4452094 1.77E-157 dispersed
Cma11g01375 Cma-Chr11:9078606 Cma19g00744 Cma-Chr19:7425701 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01375 K09872 - csv:101209627 543.502